View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_279 (Length: 238)
Name: NF11309A_low_279
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_279 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 35558972 - 35559179
Alignment:
| Q |
17 |
aaaagttctattcaaaaacatagcttcacctaaaccacacaaaaaactccacataaaatgattcatacccttacaataatcaccccctcgcgaataatac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35558972 |
aaaagttctattcaaaaacatagcttcacctaaaccacacaaaaaactccacataaaatgattcatacccttacaataatcaccacctcgcgaataatac |
35559071 |
T |
|
| Q |
117 |
aaatacttcccattcctgaaattagtctccgatcccaaactcggtatcgtgtcattaatctcgtcatcacgattcgttacacgaggcaaggttttcccct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35559072 |
aaatacttcccattcctgaaattagtctccgatcccaaactcggtatcgtgtcattaatctcgtcatcacgattcgttacccgaggcaaggttttcccct |
35559171 |
T |
|
| Q |
217 |
taccacca |
224 |
Q |
| |
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|||||||| |
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| T |
35559172 |
taccacca |
35559179 |
T |
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