View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_28 (Length: 432)
Name: NF11309A_low_28
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Complemental strand, 37508175 - 37507756
Alignment:
| Q |
8 |
tggtgttcacattctctatcctaaaaacctccgagtctttgctcacttactggcttgagtgtaaagtgcttgcaggtattcccaacttgccatcaacatt |
107 |
Q |
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| T |
37508175 |
tggtgttcacattctctatcctaaaaacctcccagtctttgctcacttactggcttgagagtaaagtgcttgcaggtattcccaacttgccatcaacatt |
37508076 |
T |
|
| Q |
108 |
gttgttcctcgtcggacgttgctcttgtgatcaaaacatatcagtgaaatcgtacgtgggaaactagttttccccgtctcttccctcacaagattcacac |
207 |
Q |
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| T |
37508075 |
gttgttcctcgtcggacgttgttcttgtgatcaaaacatatcagtgaaatcgtacgtgggaaactagttttccccgtctcttccctcaaaagattaatac |
37507976 |
T |
|
| Q |
208 |
ttctcttgataaaataatattttactttgtctcttttttattgtggatgtttaaattttatttagtgagtaacaagagtgcaatagaccaactaatctgt |
307 |
Q |
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| T |
37507975 |
ttctcttaataaaataatattttactttgtctcttttttattgtggatgtttaaattttatttagtgagtaacaagagtgcaatagaccaactaatctgt |
37507876 |
T |
|
| Q |
308 |
ggcatgtttggatgaaacacttttaagaaaaatacaaacaatgcactctaaaaaacttgtgtgctctaaaatttttgcgggactcacataatgatttatg |
407 |
Q |
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| T |
37507875 |
ggcatgtttggatgaaacacttttaagaaaaatacaaacaatgcactctaaaaaacttgtgcgctctaaaatttttgtgggactcacataatgatttatc |
37507776 |
T |
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| Q |
408 |
aacacatagttgacttactt |
427 |
Q |
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| T |
37507775 |
aacacatagttgacttactt |
37507756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 37848265 - 37848377
Alignment:
| Q |
212 |
cttgataaaataatattttactttgtctc-ttttttattgtggatgtttaaattttatttagtgagtaacaagagtgcaatagaccaactaatctgtggc |
310 |
Q |
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||||||||||||||||||||||||||||| ||||||| || ||| | ||||||||||| |||||| |||||||| ||| | || ||||||||| ||||| |
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| T |
37848265 |
cttgataaaataatattttactttgtctctttttttactggggaaggttaaattttatgtagtgaataacaagaatgccaaaggccaactaatttgtggt |
37848364 |
T |
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| Q |
311 |
atgtttggatgaa |
323 |
Q |
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|| ||||||||| |
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| T |
37848365 |
ataattggatgaa |
37848377 |
T |
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