View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_285 (Length: 235)

Name: NF11309A_low_285
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_285
NF11309A_low_285
[»] chr7 (9 HSPs)
chr7 (22-234)||(23983290-23983502)
chr7 (148-235)||(36449287-36449373)
chr7 (100-203)||(9107308-9107410)
chr7 (176-235)||(22567912-22567970)
chr7 (19-62)||(36449164-36449207)
chr7 (30-116)||(8745244-8745330)
chr7 (27-235)||(3478440-3478647)
chr7 (130-235)||(9427902-9428007)
chr7 (190-235)||(28534311-28534355)
[»] chr2 (16 HSPs)
chr2 (4-229)||(10173368-10173593)
chr2 (22-195)||(16952207-16952380)
chr2 (22-195)||(17022872-17023045)
chr2 (22-195)||(17060178-17060351)
chr2 (91-212)||(20572226-20572346)
chr2 (30-116)||(34230292-34230378)
chr2 (155-235)||(12343037-12343116)
chr2 (159-235)||(27879935-27880011)
chr2 (185-234)||(4974992-4975042)
chr2 (185-234)||(4992900-4992950)
chr2 (176-235)||(13699086-13699144)
chr2 (131-234)||(27740153-27740255)
chr2 (30-116)||(7696053-7696139)
chr2 (177-235)||(22884934-22884991)
chr2 (32-102)||(41086715-41086785)
chr2 (160-235)||(41086572-41086648)
[»] chr1 (13 HSPs)
chr1 (22-231)||(16577344-16577554)
chr1 (33-235)||(41126272-41126462)
chr1 (159-235)||(38548859-38548934)
chr1 (149-235)||(16148987-16149073)
chr1 (30-116)||(16147649-16147735)
chr1 (159-235)||(38544538-38544613)
chr1 (155-235)||(32882584-32882665)
chr1 (30-116)||(6583120-6583206)
chr1 (30-116)||(31290923-31291009)
chr1 (148-227)||(10785252-10785330)
chr1 (176-233)||(17033810-17033866)
chr1 (155-183)||(24659146-24659174)
chr1 (131-207)||(49820311-49820387)
[»] chr5 (8 HSPs)
chr5 (13-228)||(17853861-17854073)
chr5 (83-235)||(26045746-26045901)
chr5 (148-232)||(33258665-33258750)
chr5 (176-235)||(39183986-39184044)
chr5 (148-235)||(14302226-14302314)
chr5 (159-207)||(24072094-24072142)
chr5 (13-61)||(24072226-24072274)
chr5 (156-204)||(39024259-39024306)
[»] chr6 (5 HSPs)
chr6 (22-234)||(32935126-32935337)
chr6 (30-113)||(20701710-20701793)
chr6 (155-235)||(20701583-20701664)
chr6 (96-204)||(21266263-21266369)
chr6 (131-207)||(33968443-33968518)
[»] chr4 (10 HSPs)
chr4 (100-204)||(12296322-12296426)
chr4 (27-230)||(19673188-19673392)
chr4 (27-230)||(19815009-19815213)
chr4 (148-235)||(22810943-22811029)
chr4 (148-235)||(48098546-48098632)
chr4 (148-235)||(49747739-49747826)
chr4 (155-235)||(38637016-38637095)
chr4 (30-116)||(49528163-49528249)
chr4 (159-204)||(46487477-46487522)
chr4 (163-235)||(20632268-20632339)
[»] chr3 (9 HSPs)
chr3 (30-173)||(39021122-39021267)
chr3 (4-207)||(823246-823450)
chr3 (148-207)||(14879648-14879708)
chr3 (30-116)||(25647777-25647863)
chr3 (155-235)||(14194152-14194229)
chr3 (135-180)||(23328188-23328233)
chr3 (157-232)||(28937498-28937574)
chr3 (191-235)||(32010016-32010060)
chr3 (156-235)||(33143733-33143813)
[»] scaffold1613 (1 HSPs)
scaffold1613 (159-235)||(817-892)
[»] chr8 (5 HSPs)
chr8 (155-235)||(10248349-10248430)
chr8 (114-195)||(17720545-17720626)
chr8 (30-116)||(17656906-17656992)
chr8 (148-235)||(12197857-12197945)
chr8 (148-235)||(12442285-12442373)
[»] scaffold0063 (1 HSPs)
scaffold0063 (30-235)||(58218-58427)
[»] scaffold0050 (1 HSPs)
scaffold0050 (148-235)||(36920-37005)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 23983290 - 23983502
Alignment:
Q  22 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 121  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||| ||||||||| ||||||| ||||| |||||||    
T  23983290 tttttgtgttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttgatgatgag 23983389  T
Q  122 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 221  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||| |||||    
T  23983390 gaccgagaatttcatttagagcggtcttcttttggggtgagtagtgatgatgggtagttatgtatatcgtttttcagtggttgttttcgtgaatgagtct 23983489  T
Q  222 gttttaggtggtg 234  Q
    |||||||||||||    
T  23983490 gttttaggtggtg 23983502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 36449287 - 36449373
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||| | ||||||||||||||||| ||||||||| |||||||||||||| ||| |||| ||||||  ||||| |||||||||||||    
T  36449287 ttcttttgtggtgagtagtgacgatgagtggttatggatatcgtttttcagcggttgttt-cgtgaagtagtctattttaggtggtga 36449373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 9107308 - 9107410
Alignment:
Q  100 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 199  Q
    |||| |||||||||||||||||||| | |  |||||||||||| ||  || ||| ||| ||||||||| ||||||||||||||| |||||||||| || |    
T  9107308 gtggctcaactttggtgatgaggatgg-gtgtttcatttagaggggagttattttgggatgagtagtggcgatgggtggttatggatatcgttttccaat 9107406  T
Q  200 ggtc 203  Q
    ||||    
T  9107407 ggtc 9107410  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 22567970 - 22567912
Alignment:
Q  176 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||| ||| |||||||||||||| |||| ||||||  |||||||||||||||||||    
T  22567970 tggttatggataccgtttttcagtggttgttt-cgtgaaagagtctgttttaggtggtga 22567912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 36449164 - 36449207
Alignment:
Q  19 ttatttttgtgttctttcggtgtatcggaggttgagaggtggtg 62  Q
    ||||||| || ||||||||||| |||||||||||||||||||||    
T  36449164 ttattttggttttctttcggtggatcggaggttgagaggtggtg 36449207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 8745244 - 8745330
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 116  Q
    ||||||||||| ||||||||| ||||||| |||  ||| | ||||| ||||  ||| ||| ||||||||||||| ||| ||||||||    
T  8745244 ttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtg 8745330  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 235
Target Start/End: Original strand, 3478440 - 3478647
Alignment:
Q  27 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 126  Q
    |||||||||||||| ||||||| | ||||||||| |  ||| ||||||| ||||| || |||  ||||| ||  ||| | | |||||||| ||||||  |    
T  3478440 gtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttgaggactg 3478539  T
Q  127 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 225  Q
     || ||| |||| |||  || |||||| ||||||||||||||||| || |||| ||| |||||| |||| |||| ||||| | |||||| | ||||||||    
T  3478540 ggagtttaattttgaggagtgttcttt-ggggtgagtagtgacgacggttggtgatggatatcgcttttacagt-gtcgtattcgtgaagacgtctgttt 3478637  T
Q  226 taggtggtga 235  Q
     || ||||||    
T  3478638 gagttggtga 3478647  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 9428007 - 9427902
Alignment:
Q  130 atttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttagg 229  Q
    ||||||||||||| | |  | ||| ||| ||||||||||||| ||||||||||| ||||| ||||| |||||| || | ||||||  | | |||||||||    
T  9428007 atttcatttagagggatgctatttagggatgagtagtgacgacgggtggttatggatatcattttttagtggttgtcttcgtgaaagaatttgttttagg 9427908  T
Q  230 tggtga 235  Q
    | ||||    
T  9427907 tagtga 9427902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 28534355 - 28534311
Alignment:
Q  190 gtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||    
T  28534355 gtttttcagtggtcgttt-cgtgaaagagtctgttttaggtggtga 28534311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 10173593 - 10173368
Alignment:
Q  4 agtttggtgttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtgg 103  Q
    |||||||| ||||| || | || |||||||||||||| ||||||||| |||||||||||  ||  ||||||| ||| ||||||||| |||||||||||||    
T  10173593 agtttggttttgggcttttgttggtgttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtgg 10173494  T
Q  104 ttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggt 202  Q
     ||| |||||||| ||||||  |||| ||| |||| |||  || |||||| ||||||||||||||||||| |||||  |||||||||||||| |||| ||    
T  10173493 ctcagctttggtgttgaggactgagagtttaattttgaggagtattcttt-ggggtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagt 10173395  T
Q  203 cgtttacgtgaataagtctgttttagg 229  Q
    ||||| | |||| | ||||||||||||    
T  10173394 cgttttcatgaagacgtctgttttagg 10173368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 16952380 - 16952207
Alignment:
Q  22 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 121  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  16952380 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 16952281  T
Q  122 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 195  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| |||||    
T  16952280 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 16952207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 17023045 - 17022872
Alignment:
Q  22 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 121  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17023045 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17022946  T
Q  122 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 195  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| |||||    
T  17022945 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 17022872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 17060351 - 17060178
Alignment:
Q  22 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 121  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17060351 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17060252  T
Q  122 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 195  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| |||||    
T  17060251 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 17060178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 20572226 - 20572346
Alignment:
Q  91 ttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg 190  Q
    ||||||||| ||||| | |||| ||||||||||  |||| |||||||||||| ||| |||||| | ||||||||||| |||| |||||||||| ||||||    
T  20572226 ttttcggatatggtttagctttagtgatgaggaatgagagtttcatttagaggggtgttcttttgaggtgagtagtggcgat-ggtggttatggatatcg 20572324  T
Q  191 tttttcagtggtcgtttacgtg 212  Q
    ||||||||||||||||| ||||    
T  20572325 tttttcagtggtcgttttcgtg 20572346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 34230292 - 34230378
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 116  Q
    ||||||||||| |||||||||||||||||||||  ||| ||||||| |||| |||| ||| ||||| ||||||| ||||||||||||    
T  34230292 ttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactttggtg 34230378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 12343037 - 12343116
Alignment:
Q  155 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    ||||||||||||||||||| ||||||  | ||||||||||| ||| |||||||| ||||||  |||||||||||||||||||    
T  12343037 ggggtgagtagtgacgatgagtggtt--ggatatcgtttttacagaggtcgttttcgtgaaggagtctgttttaggtggtga 12343116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 27880011 - 27879935
Alignment:
Q  159 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||||  |||| ||||||||| || ||||||||||| |||||||| | ||||  |||||||||||||||||||    
T  27880011 tgagtagtggtgatgagtggttatggatttcgtttttcagaggtcgttttcctgaaggagtctgttttaggtggtga 27879935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 4974992 - 4975042
Alignment:
Q  185 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtg 234  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  4974992 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtg 4975042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 4992900 - 4992950
Alignment:
Q  185 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtg 234  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  4992900 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtg 4992950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 13699144 - 13699086
Alignment:
Q  176 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||||||| ||||||||||||||||||| ||| ||  ||| |||||||||||||||    
T  13699144 tggttatgtataccgtttttcagtggtcgttt-cgtaaaagagtgtgttttaggtggtga 13699086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 27740153 - 27740255
Alignment:
Q  131 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggt 230  Q
    |||||||||||| ||| || ||  ||| ||||||||| ||| | ||||||||| |||||||| ||||||||| |||| ||||||  ||| ||| ||||||    
T  27740153 tttcatttagaggggtgttattctgggatgagtagtggcgacgagtggttatgaatatcgttcttcagtggtagttt-cgtgaaggagtttgtattaggt 27740251  T
Q  231 ggtg 234  Q
    ||||    
T  27740252 ggtg 27740255  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 7696053 - 7696139
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 116  Q
    ||||||||||| |||| |||| | |||||||||  ||| ||||||| ||||| ||| ||| |||  |||||||| ||||||||||||    
T  7696053 ttctttcggtggatcgaaggtcgggaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtg 7696139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 22884991 - 22884934
Alignment:
Q  177 ggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    ||||||| || |||||| ||||||||||||| ||||||  |||||||||||||||||||    
T  22884991 ggttatggatttcgtttgtcagtggtcgttt-cgtgaaggagtctgttttaggtggtga 22884934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 41086785 - 41086715
Alignment:
Q  32 ctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtg 102  Q
    ||||||||| ||||||||| |||||||||||  ||| ||||||| ||||| ||| ||| |||| |||||||    
T  41086785 ctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcggataagagctttttggatgtg 41086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 41086648 - 41086572
Alignment:
Q  160 gagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    ||||||||||||||||||||  || |||||||||||  |||||||| || ||| ||   ||||||||||||||||||    
T  41086648 gagtagtgacgatgggtggtattggatatcgtttttagagtggtcgctttcgttaaggggtctgttttaggtggtga 41086572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 16577344 - 16577554
Alignment:
Q  22 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 121  Q
    |||||| |||||||||||  || ||||||||||||||||||  ||| ||||||| ||| ||||| ||| ||||||||||||| |||||||||||||||      
T  16577344 tttttgcgttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtgatggt 16577443  T
Q  122 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtc 220  Q
    ||  || | |||| ||||||| ||| |||||| || |||||||| |||||||  |||||||| |||||  ||||| ||||||||||| ||||||  ||||    
T  16577444 gactgaaagtttcttttagaggggtgttcttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtc 16577543  T
Q  221 tgttttaggtg 231  Q
    |||||||||||    
T  16577544 tgttttaggtg 16577554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 41126462 - 41126272
Alignment:
Q  33 tttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatt 132  Q
    |||||||| || ||||||||||||||| ||  ||| ||| ||| ||| | ||| ||| ||||| ||||||| |||||||||||||||||||  |||| ||    
T  41126462 tttcggtggattggaggttgagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtgatgaggactgagagtt 41126363  T
Q  133 tcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtgg-tcgtttacgtgaataagtctgttttaggtg 231  Q
    ||||||||||             |||||||||||||||||||||||| ||| |||||||||| |||||| | |||| |||||||  ||||||||||||||    
T  41126362 tcatttagag-------------gggtgagtagtgacgatgggtggtgatggatatcgttttacagtggtttgttttcgtgaatgcgtctgttttaggtg 41126276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 38548934 - 38548859
Alignment:
Q  159 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||  |||||||||||||||||||    
T  38548934 tgagtagtgacgatgggtggttatgaatatcgtttttcagtgatcgttt-cgtgaaagagtctgttttaggtggtga 38548859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 16148987 - 16149073
Alignment:
Q  149 tctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    ||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||||| ||||   ||||||||||||||||||    
T  16148987 tctttgggggtgagtagtgacgatgggtgcttttggatatcgtttttcagtagtcgtttacatgaaggtgtctgttttaggtggtga 16149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 16147649 - 16147735
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 116  Q
    ||||||||||  ||||||||| |||||||||||| ||  ||||||| ||||  ||||||| ||||||||||||| ||| ||||||||    
T  16147649 ttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtg 16147735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 38544613 - 38544538
Alignment:
Q  159 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| ||  || ||||||  |||||||||||||||||||    
T  38544613 tgagtagtgacgatgagtggttatggatatcgttttccagtgatc-attccgtgaaagagtctgttttaggtggtga 38544538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 32882584 - 32882665
Alignment:
Q  155 ggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||||||||||||||||||||  || ||||||| ||| ||||| |||||| ||||||  |||| |||||||| |||||    
T  32882584 ggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtga 32882665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 6583206 - 6583120
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 116  Q
    ||||||||||| ||||||||| |||||||||||  ||| || |||| ||||  ||| ||| |||||||||| || ||| ||||||||    
T  6583206 ttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggtg 6583120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 31291009 - 31290923
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 116  Q
    ||||||||||| ||||||||| |||||||||||  ||  |  |||| ||||| ||| ||| ||||||||||||| ||| ||||||||    
T  31291009 ttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 31290923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 10785330 - 10785252
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgtttta 227  Q
    ||||| |||| |||||||||||||||||||||  || |||||| ||||||||  ||||||| ||||||  |||||||||||    
T  10785330 ttcttgcgggatgagtagtgacgatgggtggt--tggatatcgttttttcagatgtcgttttcgtgaaggagtctgtttta 10785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 17033810 - 17033866
Alignment:
Q  176 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggt 233  Q
    |||||||||||| ||||||| ||||||||||| ||||||  ||| |||||||||||||    
T  17033810 tggttatgtataccgtttttaagtggtcgttt-cgtgaaagagtatgttttaggtggt 17033866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 24659146 - 24659174
Alignment:
Q  155 ggggtgagtagtgacgatgggtggttatg 183  Q
    |||||||||||||||||||||||||||||    
T  24659146 ggggtgagtagtgacgatgggtggttatg 24659174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 49820311 - 49820387
Alignment:
Q  131 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 207  Q
    |||||||||||| |||  | ||| ||| || || ||| ||| ||||||||||| |||||||||||||||| ||||||    
T  49820311 tttcatttagaggggtgatattttgggatgtgtggtggcgacgggtggttatggatatcgtttttcagtgctcgttt 49820387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 17854073 - 17853861
Alignment:
Q  13 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaacttt 112  Q
    ||||| |||||||  ||||||||||||| | | || ||||||||||||||  ||  ||||||| ||| ||||||||  ||||||||||||| ||| || |    
T  17854073 ttgggcttattttaatgttctttcggtggacctgaagttgagaggtggtggaagttgaatgatctttagaatatgac-ttttcggatgtggctcagctat 17853975  T
Q  113 ggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtg 212  Q
    |||||||||||| | |  ||||||||||||  |||| |||| |||||||||||||  |||||||||||||| |||||||||||||||| |||||| |||     
T  17853974 ggtgatgaggattg-gtgtttcatttagaggtgtctacttttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcgttt-cgta 17853877  T
Q  213 aataagtctgttttag 228  Q
    ||  ||||||||||||    
T  17853876 aaggagtctgttttag 17853861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 26045901 - 26045746
Alignment:
Q  83 atatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctt--tcggggtgagtagtgacgatgggtggtt 180  Q
    ||||||| |||||||| |||  |||||||||||| | ||||| |||| ||| |||| ||| ||| || ||  | ||||||||||||||||||||| |||     
T  26045901 atatgagcttttcggaggtgactcaactttggtgtttaggattgagagtttaattttgaggggtgtttttctttggggtgagtagtgacgatgggaggtg 26045802  T
Q  181 atgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
     || || |||||||| | |||||| ||| | |||| ||||||||||||||||||||    
T  26045801 ttggatttcgtttttaccgtggtcattttcatgaagaagtctgttttaggtggtga 26045746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 33258750 - 33258665
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 232  Q
    |||||| ||||||||||||| |||||| ||||  || ||||||||||| ||||||||| || |||||| |  ||||||||||||||    
T  33258750 ttctttaggggtgagtagtggcgatggatggtattggatatcgtttttacagtggtcgctttcgtgaagagatctgttttaggtgg 33258665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 39184044 - 39183986
Alignment:
Q  176 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||| ||| ||||||||||||||||||| |||||   |||||||||||||||||||    
T  39184044 tggttatggataccgtttttcagtggtcgttt-cgtgatagagtctgttttaggtggtga 39183986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 14302314 - 14302226
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||| ||| |||||||||||||  ||||||  || ||||||||||| || ||||||||| || |||  | |||||||||||||||||    
T  14302314 ttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgttttcgcgaaggaatctgttttaggtggtga 14302226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 24072142 - 24072094
Alignment:
Q  159 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 207  Q
    ||||||||||||||||||| | ||  ||||||||||| |||||||||||    
T  24072142 tgagtagtgacgatgggtgatcatagatatcgttttttagtggtcgttt 24072094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 24072274 - 24072226
Alignment:
Q  13 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggt 61  Q
    |||||||| |||| |||||||||||||| | |||||||||| |||||||    
T  24072274 ttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggt 24072226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 39024306 - 39024259
Alignment:
Q  156 gggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 204  Q
    |||||||||||||||||| ||| ||||| ||||||||||||| ||||||    
T  39024306 gggtgagtagtgacgatgagtg-ttatggatatcgtttttcaatggtcg 39024259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 32935337 - 32935126
Alignment:
Q  22 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 121  Q
    |||| ||||||||||||||  ||  |||||| |||||||||  ||| | ||||| ||||||| ||||| |||||||||||   ||| |||||||||||||    
T  32935337 ttttagtgttctttcggtggttcaaaggttgggaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtgatgag 32935238  T
Q  122 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 221  Q
     |  | || |||||||||||| | | || ||| ||||| |||||||| |||||||||||||||||||||||||| || || ||||| ||| ||  |||||    
T  32935237 cactgtgagtttcatttagagggatgtttttt-ggggtcagtagtgatgatgggtggttatgtatatcgtttttgagggggcgttttcgttaaggagtct 32935139  T
Q  222 gttttaggtggtg 234  Q
     ||||||||||||    
T  32935138 attttaggtggtg 32935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 20701793 - 20701710
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttg 113  Q
    ||||||||||| ||||||||| ||||||| |||  ||| ||||||| ||||| ||| ||| |||||| |||||| |||||||||    
T  20701793 ttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactttg 20701710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 20701664 - 20701583
Alignment:
Q  155 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||||||||||||||||| ||  || ||||||||||| ||||||| | || |||||||  ||||||| ||||||||||    
T  20701664 ggggtgagtagtgacgatgggtagtattggatatcgtttttacagtggttgctttcgtgaatgggtctgttataggtggtga 20701583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 21266263 - 21266369
Alignment:
Q  96 ggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 195  Q
    |||||||| |||  ||||||| ||||||| |||  |||| |||| | |||| ||| || |||||||||||||||||| ||| ||| || || ||||||||    
T  21266263 ggatgtggctcagttttggtgttgaggattgagt-tttcttttacaacggtgttcctttggggtgagtagtgacgat-ggttgttctggatgtcgttttt 21266360  T
Q  196 cagtggtcg 204  Q
    |||||||||    
T  21266361 cagtggtcg 21266369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 33968518 - 33968443
Alignment:
Q  131 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 207  Q
    |||||||||||| ||| || ||| ||| |||||||||| ||||  |||||||| ||| | |||||||||||||||||    
T  33968518 tttcatttagaggggtgttattttgggatgagtagtgatgatgc-tggttatggataccatttttcagtggtcgttt 33968443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 12296322 - 12296426
Alignment:
Q  100 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 199  Q
    |||| ||||||| |||||||||||  |||  |||||||||||| ||| || ||| ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  12296322 gtggctcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtggcgatgggtggttatggatatcgtttttcagt 12296421  T
Q  200 ggtcg 204  Q
    |||||    
T  12296422 ggtcg 12296426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 19673188 - 19673392
Alignment:
Q  27 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 126  Q
    |||||||||||||| ||||  ||| || || |||||  |||  |||||||||| | ||||||  ||||||||||||| | |||||||||| ||||||  |    
T  19673188 gtgttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactg 19673287  T
Q  127 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 225  Q
    ||| ||| |||| |||  || |||||| ||||||||||||||||| || ||||  || |||| | |||| |||||||| ||| |||||| | ||||||||    
T  19673288 agagtttaattttgaggagtgttctttgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcattttcgtgaagacgtctgttt 19673387  T
Q  226 taggt 230  Q
     ||||    
T  19673388 gaggt 19673392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 19815213 - 19815009
Alignment:
Q  27 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 126  Q
    |||||||||||||| | ||||||| ||||| |||||  |||  |||||| ||||| ||| ||  ||||| ||||||| | |||||||||| ||||||  |    
T  19815213 gtgttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgttgaggactg 19815114  T
Q  127 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttt 225  Q
    ||| ||| || | |||  || |||||| ||||||||||||||| | || ||||  || ||||| ||||| | |||||| ||| |||||| | ||||||||    
T  19815113 agagtttaatcttgagaagtgttctttgggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcattttcgtgaagacgtctgttt 19815014  T
Q  226 taggt 230  Q
     ||||    
T  19815013 gaggt 19815009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 22811029 - 22810943
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||| |||||||||||||||||||| ||||   | ||||||||||| ||||||||| || ||||||  ||||||||||||| |||||    
T  22811029 ttctttgggggtgagtagtgacgatggatggt--aggatatcgtttttacagtggtcggtttcgtgaagcagtctgttttaggaggtga 22810943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 48098546 - 48098632
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||| ||||||||||||||||| |||| || ||| ||||||||||| ||||||||||||  ||||  |||  |||||||||||||||    
T  48098546 ttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtga--aagagtgttttaggtggtga 48098632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 49747739 - 49747826
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||| ||||||||||||||| ||||| |||  || || |||||||| || ||||||||| ||||||  |||||||||||||||||||    
T  49747739 ttctttaggggtgagtagtgacaatgggcggtgttggat-tcgtttttacaatggtcgttttcgtgaaagagtctgttttaggtggtga 49747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 38637095 - 38637016
Alignment:
Q  155 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||||||||||||||||||||  || ||||| ||||| ||| ||| |||| ||||||  ||| |||||||||||||||    
T  38637095 ggggtgagtagtgacgatgggtggt--tggatatcatttttacagcggttgttttcgtgaaggagtttgttttaggtggtga 38637016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 49528163 - 49528249
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 116  Q
    ||||||||||| ||||||||| | |||||||||  ||  ||||||| ||||| |||  || ||| ||||||||||||| ||||||||    
T  49528163 ttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtg 49528249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 46487477 - 46487522
Alignment:
Q  159 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 204  Q
    ||||||||| ||||  ||||||||| ||||||||||||||||||||    
T  46487477 tgagtagtggcgatatgtggttatgaatatcgtttttcagtggtcg 46487522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 20632339 - 20632268
Alignment:
Q  163 tagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    ||||| ||| |||||||||||| ||||||| ||||||||| ||||  |||||  ||||||||||||| |||||    
T  20632339 tagtggcgacgggtggttatgtgtatcgttcttcagtggttgttt-tgtgaaagagtctgttttagggggtga 20632268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 39021267 - 39021122
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatattt-cgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgag 128  Q
    |||||| |||| ||||||||| ||||| ||||| |||| || |||| ||| || ||||||| ||||||||||||| | | |||||||| ||||||  |||    
T  39021267 ttcttttggtggatcggaggtcgagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggcttagctttggtgttgaggactgag 39021168  T
Q  129 aatttcatttaga-gcggtcttctttcggggtgagtagtgacgatg 173  Q
    | |||||||| || |||   |||||| || ||||||||||||||||    
T  39021167 agtttcattttgacgcgtgtttctttgggtgtgagtagtgacgatg 39021122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 823450 - 823246
Alignment:
Q  4 agtttggtgttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtgg 103  Q
    ||||| || ||||| ||||||| |||||||||||||  | | ||||||||||||||| |  ||| ||||||| |||  |||| ||  ||||| |||||||    
T  823450 agttttgttttgggcttattttggtgttctttcggtagaccagaggttgagaggtggcggaagctgaatgatcttttcaataggacattttcagatgtgg 823351  T
Q  104 ttcaactttggtgatgaggatcgagaatttcatttagagcggtctt-ctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggt 202  Q
     |||| | |||| || ||||    |  ||| | |||||| ||| || ||||  |||||||||| | ||| ||||||||||| ||||||||||||||||||    
T  823350 ctcaattatggtaataaggacatggtgtttgaattagagaggtgtttcttttagggtgagtagaggcgaagggtggttatggatatcgtttttcagtggt 823251  T
Q  203 cgttt 207  Q
     ||||    
T  823250 tgttt 823246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 14879648 - 14879708
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgttt 207  Q
    |||||||||||||| ||||||||||| |||||  || |||||| |||||||||||||||||    
T  14879648 ttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagtggtcgttt 14879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 25647777 - 25647863
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 116  Q
    |||||| |||| ||||||||| |||||||||||| ||  ||||||| |||||  |||||| |||||||| |||| |||  |||||||    
T  25647777 ttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctcagttttggtg 25647863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 14194152 - 14194229
Alignment:
Q  155 ggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||||||||||||||| ||||  || |||||||| |||||||| || || |||||   |||||||||||||||||||    
T  14194152 ggggtgagtagtgacgatggatggt--tggatatcgttattcagtgg-cgatttcgtgatggagtctgttttaggtggtga 14194229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 23328233 - 23328188
Alignment:
Q  135 atttagagcggtcttctttcggggtgagtagtgacgatgggtggtt 180  Q
    |||| ||| ||| |||||| ||||||||||||||||||||||||||    
T  23328233 attttgagtggtgttctttgggggtgagtagtgacgatgggtggtt 23328188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 28937574 - 28937498
Alignment:
Q  157 ggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 232  Q
    ||||||||||| |||||||||||  || ||||||||||| ||||||||  || ||||||   |||||||||||||||    
T  28937574 ggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttaggtgg 28937498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 32010016 - 32010060
Alignment:
Q  191 tttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||    
T  32010016 tttttcagaggtcgttttcgtgaaggagtctgttttaggtggtga 32010060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 33143813 - 33143733
Alignment:
Q  156 gggtgagtagtgacgatgggtggttatgtatatcgttt-ttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||||||||||||| || |||   || ||||||||| ||||||||| |||| ||||||  ||| |||||||||||||||    
T  33143813 gggtgagtagtgacgacggatggggttggatatcgtttgttcagtggtggttttcgtgaaggagtttgttttaggtggtga 33143733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 892 - 817
Alignment:
Q  159 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| ||  || ||||||  |||||||||||||||||||    
T  892 tgagtagtgacgatgagtggttatggatatcgttttccagtgatc-attccgtgaaagagtctgttttaggtggtga 817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 10248430 - 10248349
Alignment:
Q  155 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    ||||||||||||||||||||||| |   | || |||||||| |||||||||||| ||||||  ||| |||||||||||||||    
T  10248430 ggggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtga 10248349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 17720626 - 17720545
Alignment:
Q  114 gtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 195  Q
    ||||||||||  |||  |||||||||||| ||| |  ||| ||||||||||||||||||  ||||||||||||||| |||||    
T  17720626 gtgatgaggacggagtgtttcatttagaggggtttatttttggggtgagtagtgacgatatgtggttatgtatatctttttt 17720545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 17656992 - 17656906
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 116  Q
    ||||||||||| ||||||||| || ||||||||  ||| ||||||| ||||  ||| ||| ||||| || |||| ||||||||||||    
T  17656992 ttctttcggtggatcggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtg 17656906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 12197945 - 12197857
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| ||||||||||    
T  12197945 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtga 12197857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 12442373 - 12442285
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| ||||||||||    
T  12442373 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtga 12442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 58218 - 58427
Alignment:
Q  30 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgaga 129  Q
    ||||||||||| ||||||||| ||||| || ||  ||| |||| || ||||| ||| ||| |||||| |||||| ||| |||||||| |  |||  ||||    
T  58218 ttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgaga 58317  T
Q  130 atttcatttagagcggtctt---ctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtctgttt 225  Q
     ||| |||| |||  || ||   |||| || |||||||||||||| |||| ||  || ||||| ||||| || ||||||||| ||||||  |||||||||    
T  58318 gtttaattttgaggagtgttgttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgttt 58417  T
Q  226 taggtggtga 235  Q
    | ||||||||    
T  58418 ttggtggtga 58427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 36920 - 37005
Alignment:
Q  148 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 235  Q
    |||||| |||||||||||||||| ||| ||||  || || |||||||| ||||||| |||| ||||||  |||||||||||||||||||    
T  36920 ttctttgggggtgagtagtgacggtggatggt--tggatgtcgtttttacagtggtggttt-cgtgaaggagtctgttttaggtggtga 37005  T

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