View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_287 (Length: 234)

Name: NF11309A_low_287
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_287
NF11309A_low_287
[»] chr1 (2 HSPs)
chr1 (19-213)||(3429003-3429197)
chr1 (42-212)||(3425544-3425717)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 3429003 - 3429197
Alignment:
Q  19 atactaacacctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3429003 atactaacacctaccactagtatctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaaccttcat 3429102  T
Q  119 tttcttgtgaagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttggt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3429103 tttcttgtgaagtggaagtagttggaacaagtacaaggttgtcaatatctttgtcaatgatggaaaaaactacaggggtagccaagaatgttggt 3429197  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 3425544 - 3425717
Alignment:
Q  42 ctaccacatgattttactaaccaactagctagtgaaacacaatcactgcctatgttgtgaagaacaagaacct---tcattttcttgtgaagtggaagta 138  Q
    ||||||||||| ||||| ||| |||||| || ||||||||||||| || |||||||||||||| |||||||||   ||||||||||||||||||||||||    
T  3425544 ctaccacatgactttaccaacaaactaggtaatgaaacacaatcattgtctatgttgtgaagagcaagaacctacttcattttcttgtgaagtggaagta 3425643  T
Q  139 gttggaacaagtacaaggttgtcaatatctttgtcaatgatggacaaaactacaggggtagccaagaatgttgg 212  Q
    | |||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||    
T  3425644 gctggaacaagtacaaggttgtcaatttcattgttaatgatggacaaaactacaggggtagccaagaatgttgg 3425717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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