View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_289 (Length: 233)

Name: NF11309A_low_289
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_289
NF11309A_low_289
[»] chr8 (2 HSPs)
chr8 (8-119)||(29273450-29273561)
chr8 (151-213)||(29273593-29273655)
[»] chr1 (2 HSPs)
chr1 (44-119)||(268060-268135)
chr1 (154-213)||(268170-268229)
[»] chr4 (6 HSPs)
chr4 (154-211)||(18655290-18655347)
chr4 (154-211)||(18679380-18679437)
chr4 (154-211)||(18723898-18723955)
chr4 (154-211)||(18699213-18699270)
chr4 (154-211)||(18731317-18731374)
chr4 (44-118)||(18731208-18731281)
[»] chr6 (4 HSPs)
chr6 (155-213)||(28786580-28786638)
chr6 (172-213)||(28781441-28781482)
chr6 (172-213)||(28792701-28792742)
chr6 (172-214)||(26861914-26861956)
[»] scaffold0419 (1 HSPs)
scaffold0419 (155-213)||(7827-7885)
[»] scaffold0277 (2 HSPs)
scaffold0277 (155-213)||(4498-4556)
scaffold0277 (155-213)||(13459-13517)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 29273450 - 29273561
Alignment:
Q  8 atgtcgaataatataagttaggattagtagggaaccactaatacttatttagaaatgtaaataaaaacggttttatccatttatgatttaagatggtatt 107  Q
    ||||| ||||||| ||||||| | ||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29273450 atgtcaaataatacaagttagtaatagtatgtaacaactaatacttatttagaaacgtaaataaaaacggttttatccatttatgatttaagatggtatt 29273549  T
Q  108 attgaggaatag 119  Q
    ||||||||||||    
T  29273550 attgaggaatag 29273561  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 29273593 - 29273655
Alignment:
Q  151 caggaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgg 213  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  29273593 caggaattaagtaaagagcagtacccatgactagaatggtagccagacaagttagaagcttgg 29273655  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 268060 - 268135
Alignment:
Q  44 actaatacttatttagaaatgtaaataaaaacggttttatccatttatgatttaagatggtattattgaggaatag 119  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||    
T  268060 actaatacttatttagaaacgtaaataaaaaaggttttagccatttatggtttaagatggtattatcgaggaatag 268135  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 268170 - 268229
Alignment:
Q  154 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgg 213  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  268170 gaattaagtaaagagcagtacccacgactagaatggtagccagacaagttagaagcttgg 268229  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 18655290 - 18655347
Alignment:
Q  154 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagctt 211  Q
    ||||||||| ||||| | ||||||||||||||||||||||| |||||||||| |||||    
T  18655290 gaattaagtgaagaggagtacccaggactagaatggtagccggacaagttagcagctt 18655347  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 18679380 - 18679437
Alignment:
Q  154 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagctt 211  Q
    ||||||||||||||| | |||||||||||| |||||||||| |||||||||| |||||    
T  18679380 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagctt 18679437  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 18723898 - 18723955
Alignment:
Q  154 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagctt 211  Q
    ||||||||||||||| | |||||||||||| |||||||||| |||||||||| |||||    
T  18723898 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagctt 18723955  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 18699213 - 18699270
Alignment:
Q  154 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagctt 211  Q
    ||||||||||||||| | ||||||| |||| |||||||||| |||||||||| |||||    
T  18699213 gaattaagtaaagaggagtacccagaactaaaatggtagccggacaagttagcagctt 18699270  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 18731317 - 18731374
Alignment:
Q  154 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagctt 211  Q
    ||||||||||||||| | |||||| ||||| |||||||||| |||||||||| |||||    
T  18731317 gaattaagtaaagaggagtacccatgactaaaatggtagccggacaagttagcagctt 18731374  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 18731208 - 18731281
Alignment:
Q  44 actaatacttatttagaaatgtaaataaaaacggttttatccatttatgatttaagatggtattattgaggaata 118  Q
    |||||||||| |||| ||||||||| ||||| ||| ||  | ||||| | |||||||||||||||||||||||||    
T  18731208 actaatacttgtttaaaaatgtaaaaaaaaa-ggtgtttccaatttaggctttaagatggtattattgaggaata 18731281  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 28786638 - 28786580
Alignment:
Q  155 aattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgg 213  Q
    ||||||||||| ||   ||||||||||||||||||||||| |||||||||| |||||||    
T  28786638 aattaagtaaatagtcgtacccaggactagaatggtagccggacaagttagcagcttgg 28786580  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 28781482 - 28781441
Alignment:
Q  172 tacccaggactagaatggtagccagacaagttagaagcttgg 213  Q
    ||||||||||||||||||||||| |||||||||| |||||||    
T  28781482 tacccaggactagaatggtagccggacaagttagcagcttgg 28781441  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 28792742 - 28792701
Alignment:
Q  172 tacccaggactagaatggtagccagacaagttagaagcttgg 213  Q
    ||||||||||||||||||||||| |||||||||| |||||||    
T  28792742 tacccaggactagaatggtagccggacaagttagcagcttgg 28792701  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 26861956 - 26861914
Alignment:
Q  172 tacccaggactagaatggtagccagacaagttagaagcttggt 214  Q
    |||||||||||| |||||||||| |||||||||| ||||||||    
T  26861956 tacccaggactaaaatggtagcctgacaagttagcagcttggt 26861914  T

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Target: scaffold0419 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 7885 - 7827
Alignment:
Q  155 aattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgg 213  Q
    ||||||||||| ||   |||||| |||||||||||||||| |||||||||| |||||||    
T  7885 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcagcttgg 7827  T

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Target: scaffold0277 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 4498 - 4556
Alignment:
Q  155 aattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgg 213  Q
    ||||||||||| ||   |||||| |||||||||||||||| |||||||||| |||||||    
T  4498 aattaagtaaataggcgtacccatgactagaatggtagccggacaagttagcagcttgg 4556  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 13459 - 13517
Alignment:
Q  155 aattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgg 213  Q
    ||||||||||| ||   |||||| |||||||||||||||| |||||||||| |||||||    
T  13459 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcagcttgg 13517  T

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