View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_292 (Length: 232)
Name: NF11309A_low_292
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_292 |
 | |
|
| [»] scaffold0421 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0421 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 13653 - 13454
Alignment:
| Q |
14 |
aatacaagatttaagatatacatcaccttcaacggtttgattcggcgacggagacaacagtcaatgttgaattgcagaaggagaagagaccgtttgagag |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
13653 |
aatacaagatttaaaatatacatcaccttcaacggtttgattcggcgacggagacagcagtcgatgttgaatcgcagaaggagaagagaccgttagagag |
13554 |
T |
|
| Q |
114 |
aatgcggccgtcggagactgggaagagatggcggtcggagattggagactaggaggagatggagggcaaagctcgaaatttgggaggagatggcgaagac |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||| || | ||||||||||||||| ||||| |
|
|
| T |
13553 |
aatgcagccgtcggagactgggaagagatggcggtcggagatcggagactatgaggagatggcggtcaaagaccggagattgggaggagatggcaaagac |
13454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 47345319 - 47345372
Alignment:
| Q |
93 |
ggagaagagaccgtttgagagaatgcggccgtcggagactgggaagagatggcg |
146 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
47345319 |
ggagaagagatcgttagagagaatgcggcggtcggagattgggaggagatggcg |
47345372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 3798236 - 3798187
Alignment:
| Q |
95 |
agaagagaccgtttgagagaatgcggccgtcggagactgggaagagatgg |
144 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
3798236 |
agaagagatcgttagagagaatgcggcggtcggagactgagaggagatgg |
3798187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 39033975 - 39034014
Alignment:
| Q |
136 |
aagagatggcggtcggagattggagactaggaggagatgg |
175 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
39033975 |
aagagatggcggtcggagatcggagactgggaggagatgg |
39034014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University