View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_3 (Length: 726)

Name: NF11309A_low_3
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_3
NF11309A_low_3
[»] chr6 (12 HSPs)
chr6 (7-522)||(31519964-31520479)
chr6 (7-389)||(17311066-17311448)
chr6 (593-697)||(17308652-17308756)
chr6 (598-699)||(31520555-31520656)
chr6 (405-490)||(17308872-17308957)
chr6 (593-699)||(4448556-4448662)
chr6 (593-699)||(13508178-13508284)
chr6 (593-699)||(4968912-4969018)
chr6 (458-522)||(4968776-4968840)
chr6 (458-522)||(13508043-13508107)
chr6 (463-516)||(28679580-28679633)
chr6 (458-516)||(4448740-4448798)
[»] chr1 (7 HSPs)
chr1 (7-502)||(2399099-2399594)
chr1 (7-490)||(45877612-45878092)
chr1 (593-699)||(2398925-2399031)
chr1 (593-699)||(34677985-34678091)
chr1 (598-699)||(20338275-20338376)
chr1 (593-699)||(49326887-49326993)
chr1 (452-522)||(20338452-20338522)
[»] chr3 (8 HSPs)
chr3 (7-502)||(6305904-6306399)
chr3 (16-518)||(32926364-32926865)
chr3 (243-522)||(20856657-20856949)
chr3 (593-699)||(20857020-20857126)
chr3 (593-699)||(32926940-32927046)
chr3 (598-679)||(6306473-6306554)
chr3 (7-73)||(20850280-20850346)
chr3 (593-699)||(33908197-33908302)
[»] chr7 (16 HSPs)
chr7 (25-490)||(26172373-26172838)
chr7 (194-522)||(7916403-7916731)
chr7 (7-137)||(7916278-7916407)
chr7 (593-699)||(7916802-7916908)
chr7 (600-699)||(26172961-26173060)
chr7 (593-699)||(38705264-38705370)
chr7 (593-699)||(19763731-19763836)
chr7 (598-699)||(7305412-7305512)
chr7 (241-522)||(17738164-17738442)
chr7 (612-697)||(21780374-21780459)
chr7 (612-697)||(18341343-18341428)
chr7 (458-522)||(38705441-38705505)
chr7 (463-522)||(21780549-21780608)
chr7 (480-518)||(26172841-26172879)
chr7 (463-516)||(18341524-18341577)
chr7 (7-52)||(17737948-17737993)
[»] scaffold0878 (2 HSPs)
scaffold0878 (593-699)||(1139-1245)
scaffold0878 (412-522)||(1316-1439)
[»] chr2 (5 HSPs)
chr2 (593-699)||(37392579-37392685)
chr2 (593-699)||(11881525-11881631)
chr2 (593-699)||(40654840-40654945)
chr2 (593-699)||(35593868-35593973)
chr2 (594-699)||(4968351-4968455)
[»] chr8 (6 HSPs)
chr8 (604-699)||(35630544-35630639)
chr8 (593-699)||(11721970-11722075)
chr8 (442-515)||(35068914-35068986)
chr8 (7-56)||(35631380-35631429)
chr8 (458-522)||(9763711-9763775)
chr8 (477-518)||(35630725-35630766)
[»] chr4 (7 HSPs)
chr4 (593-699)||(38972720-38972826)
chr4 (620-699)||(5323229-5323308)
chr4 (593-699)||(16923771-16923876)
chr4 (446-522)||(14779474-14779550)
chr4 (7-56)||(5322712-5322761)
chr4 (458-522)||(38972897-38972961)
chr4 (477-518)||(5323086-5323127)
[»] scaffold0260 (2 HSPs)
scaffold0260 (598-699)||(598-699)
scaffold0260 (452-522)||(775-845)
[»] chr5 (4 HSPs)
chr5 (593-699)||(33891244-33891350)
chr5 (593-699)||(37574238-37574347)
chr5 (458-522)||(33891421-33891485)
chr5 (461-522)||(37574418-37574479)
[»] scaffold0005 (1 HSPs)
scaffold0005 (446-522)||(60180-60256)
[»] scaffold1414 (1 HSPs)
scaffold1414 (463-516)||(1678-1731)


Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 7 - 522
Target Start/End: Original strand, 31519964 - 31520479
Alignment:
Q  7 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31519964 gaaaatgccaaggacaacacttggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagagtctgct 31520063  T
Q  107 acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct 206  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31520064 gcatgcaggcttgaagtgactaaagtaggtggctgtcaggaaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct 31520163  T
Q  207 ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt 306  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31520164 ctgcattgtttcctgttgatttgacaaggctttgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt 31520263  T
Q  307 ttttcctgtcgttctgctgctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggcnnnnnnngc 406  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  31520264 ttttcctgtcgttctgctgctatctggtacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggctttttttgc 31520363  T
Q  407 tccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatt 506  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31520364 tctctatataaatccatgcaccgatcatgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatt 31520463  T
Q  507 tggtaaaaaatacttc 522  Q
    ||||||||||||||||    
T  31520464 tggtaaaaaatacttc 31520479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 17311448 - 17311066
Alignment:
Q  7 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| || |    
T  17311448 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaaaccctcacttattgcaaagtgggaaattaaaattcaagaatatggt 17311349  T
Q  107 acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct 206  Q
     ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||    
T  17311348 gcatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaatcgagggaatatgctagggaaaacccctgggataggaaaaaaggtgatgaatct 17311249  T
Q  207 ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt 306  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17311248 ctgctttgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaataccccttgtttattgcgtgaatccctggctt 17311149  T
Q  307 ttttcctgtcgttctgctgctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggatag 389  Q
    ||||||||  ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17311148 ttttcctgctgttctgctgctatttgatacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggatag 17311066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 593 - 697
Target Start/End: Complemental strand, 17308756 - 17308652
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17308756 gcagctgtgttacttatctgcctcctatggttagctattggtccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 17308657  T
Q  693 ttagt 697  Q
    |||||    
T  17308656 ttagt 17308652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 598 - 699
Target Start/End: Original strand, 31520555 - 31520656
Alignment:
Q  598 tgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagt 697  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31520555 tgtgttacttatctgcctcctttggttagttattgctccaactcttgttgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagt 31520654  T
Q  698 ga 699  Q
    ||    
T  31520655 ga 31520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 405 - 490
Target Start/End: Complemental strand, 17308957 - 17308872
Alignment:
Q  405 gctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattca 490  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17308957 gctccctatataaatccatgcaccgatcatgtaatagacttcacaacacttataaaattttctccacataaaacacaacacattca 17308872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 4448662 - 4448556
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||| ||||||||||||||||||||| |||| |||||||||| ||||| ||| |||||||||||||||||| |||||| ||| |||||||||||||||||    
T  4448662 gcagttgtgttacttatctgcctcctgtggtcagctattgcttcaactgttgttgtttttggattgcattggagatcttctagtgtaaagcttcaacaag 4448563  T
Q  693 ttagtga 699  Q
    |||||||    
T  4448562 ttagtga 4448556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 593 - 699
Target Start/End: Original strand, 13508178 - 13508284
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||| ||||||||||||||||||||| |||| || ||||||| ||||| ||| |||||||||||||||||| |||||| ||| |||||||||||||||||    
T  13508178 gcagttgtgttacttatctgcctcctgtggtcagttattgcttcaactgttgttgtttttggattgcattggagatcttctagtgtaaagcttcaacaag 13508277  T
Q  693 ttagtga 699  Q
    |||||||    
T  13508278 ttagtga 13508284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 593 - 699
Target Start/End: Original strand, 4968912 - 4969018
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||| ||||||| ||| ||| ||||| |||| | ||||||| |||||||||  |||||| ||||||||||||||||||  ||||||||||||||||||||    
T  4968912 gcagttgtgttatttacctgtctcctgtggtcaactattgccccaactcttattgttttcggattgcattgcagatcttttattgtaaagcttcaacaag 4969011  T
Q  693 ttagtga 699  Q
    |||||||    
T  4969012 ttagtga 4969018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 4968776 - 4968840
Alignment:
Q  458 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    |||||||||||||| |||||||||| || |||| |  ||||||||||||||||||||||| ||||    
T  4968776 aaaattttcttcacttaaaacacaaaaccttcatcgaacttcatttatttggtaaaaaattcttc 4968840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 13508043 - 13508107
Alignment:
Q  458 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  13508043 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 13508107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 516
Target Start/End: Original strand, 28679580 - 28679633
Alignment:
Q  463 tttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaa 516  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||||||    
T  28679580 tttcttcacttaaaacacaaaaccttcatcaaacttcatttatttggtaaaaaa 28679633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 4448798 - 4448740
Alignment:
Q  458 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaa 516  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||    
T  4448798 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaa 4448740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 7 - 502
Target Start/End: Complemental strand, 2399594 - 2399099
Alignment:
Q  7 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct 106  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2399594 gaaaatgccaaggacaacacctggcatatgatacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct 2399495  T
Q  107 acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct 206  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2399494 acatggaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaatgtgatgaatct 2399395  T
Q  207 ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2399394 ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt 2399295  T
Q  307 ttttcctgtcgttctgctgctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggcnnnnnnngc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  2399294 ttttcctgtcgttctgctgctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggctttttttgc 2399195  T
Q  407 tccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatt 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2399194 tccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatt 2399099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Complemental strand, 45878092 - 45877612
Alignment:
Q  7 gaaaatgccaaggacaacacctggcata-taacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgc 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45878092 gaaaatgccaaggacaacacctggcataataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatttgc 45877993  T
Q  106 tacatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatc 205  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45877992 tgcatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaactgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatc 45877893  T
Q  206 tctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45877892 tctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggct 45877793  T
Q  306 tttttcctgtcgttctgctgctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggcnnnnnnng 405  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       |    
T  45877792 ttcttcctgtcgttctgctgctatctggtacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataagccgtggctttttttg 45877693  T
Q  406 ctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattca 490  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||||||     |||||||||||||||||||||||||||||    
T  45877692 ctccctatataaatctatgcaccgatcatgtaacaaacttcacaacacttag----ttttcttcacataaaacacaacacattca 45877612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 2399031 - 2398925
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2399031 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 2398932  T
Q  693 ttagtga 699  Q
    |||||||    
T  2398931 ttagtga 2398925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 34678091 - 34677985
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||| ||| ||||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  34678091 gcagctgttttatttatccgcctcctgttgttagctattgctccaactcttgctgtttttgaattgcattgcagatgttctattgtaaagcttcaacaag 34677992  T
Q  693 ttagtga 699  Q
    |||||||    
T  34677991 ttagtga 34677985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 598 - 699
Target Start/End: Complemental strand, 20338376 - 20338275
Alignment:
Q  598 tgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagt 697  Q
    ||||||||||||||||||||| |||| ||||||||  | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20338376 tgtgttacttatctgcctcctgtggtcagctattgtccaaactcttgttgtttttggattgcattgcagatcttctattgtaaagcttcaacaagttagt 20338277  T
Q  698 ga 699  Q
    ||    
T  20338276 ga 20338275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 49326993 - 49326887
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||| ||||| ||||||||||||||| |||| ||||||||| | |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||    
T  49326993 gcagttgtgtcacttatctgcctcctgtggtcagctattgcccaaactcttgttgtttttggattgcattgcagatcttatattgtaaagcttcaacaag 49326894  T
Q  693 ttagtga 699  Q
    |||||||    
T  49326893 ttagtga 49326887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 522
Target Start/End: Complemental strand, 20338522 - 20338452
Alignment:
Q  452 acttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    ||||| |||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||| ||||    
T  20338522 acttagaaaattttcttcacttaaaacacaacaccttcatcaaacttcatttatttggtaaaaaattcttc 20338452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 502
Target Start/End: Original strand, 6305904 - 6306399
Alignment:
Q  7 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct 106  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6305904 gaaaatgccaaggacaacacctggcatataacacaagggttttccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctact 6306003  T
Q  107 acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6306004 acatgcaggcttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatct 6306103  T
Q  207 ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6306104 ctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggctt 6306203  T
Q  307 ttttcctgtcgttctgctgctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggcnnnnnnngc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||       ||    
T  6306204 ttttcctgtcgttctgctgctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcgaataggcagtggctttttttgc 6306303  T
Q  407 tccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatt 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6306304 tccctatataaatccatgcaccgatcctgtaacagacttcacaactcttataaaattttcttcacataaaacacaacacattcaacatacttcatt 6306399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 518
Target Start/End: Original strand, 32926364 - 32926865
Alignment:
Q  16 aaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacatgcagg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  32926364 aaggacaacacctggcatataacacaagggtttgccctcacaaaactcctcacttattgcaaggtgggaaattgaaattcaagaatctgttgcatgcagg 32926463  T
Q  116 cttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatctctgcattgt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32926464 cttgaagtgactaaagtaggtggctgtcaggcaaaaaccgagggaatatgtcagggaaagcccctgggatgggaaaaaaggtgatgaatctctgcattgt 32926563  T
Q  216 ttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttcctgt 315  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32926564 ttcctgttgatttgacaaggctctgaaaagcctgtccggtccggttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttcctat 32926663  T
Q  316 cgttctgctgctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggcnnnnnnngctccctatat 415  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |       |||||||||||    
T  32926664 cgttctgctgctatctggtacctagctatatgctaggatttgaccaagcatgcgaggggcattccttcggataggccgtgactttttttgctccctatat 32926763  T
Q  416 aaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaa 515  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||    
T  32926764 aaatccatgcaccgatcatgtaacatacttcacaacacttataaaattttcttcacat-tcactcaacacattcaacatacttcatttatttggtaaaaa 32926862  T
Q  516 ata 518  Q
    |||    
T  32926863 ata 32926865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 243 - 522
Target Start/End: Original strand, 20856657 - 20856949
Alignment:
Q  243 aagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttcctgtcgttctgctgctatctgttacctagct 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||    
T  20856657 aagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttcctgtcattctgctgctatctggtacctaact 20856756  T
Q  343 atatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggcnnnnnnngctccctatataaatccatgcaccgatcctgtaacaga 442  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||| |||||||||    
T  20856757 atatgttaggatttgaccaagcatgcgaggggcattccctcagataggccgtggctttttttgctccctatataaatccatgcaccgatcatgtaacaga 20856856  T
Q  443 cttcacaacacttataaaattttcttcacataaaacaca-------------acacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    ||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||    
T  20856857 cttcagaacacttataaaattttcttcacataaaacacaacacattcactccacacattcaacatacttcatttatttggtaaaaaatacttc 20856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 593 - 699
Target Start/End: Original strand, 20857020 - 20857126
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  20857020 gcagctgtgttacttatctgcctcctttgattagctattgctccaactcttgctgtttttggattgcattacagatctgctattgtaaagcttcaacaaa 20857119  T
Q  693 ttagtga 699  Q
    |||||||    
T  20857120 ttagtga 20857126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 593 - 699
Target Start/End: Original strand, 32926940 - 32927046
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  32926940 gcagctgtgttacttatctgcctcctttgattagctattgctccaactcttactgtttttggattgcattgcagatctactattgtaaagcttcaacaag 32927039  T
Q  693 ttagtga 699  Q
    |||||||    
T  32927040 ttagtga 32927046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 598 - 679
Target Start/End: Original strand, 6306473 - 6306554
Alignment:
Q  598 tgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgta 679  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6306473 tgtgttacttatctgcctcctttggttagctattgctccaactcttgttgtttttggattgcattgcagatctgctattgta 6306554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 20850280 - 20850346
Alignment:
Q  7 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttatt 73  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20850280 gaaaatgcgaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttatt 20850346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 33908302 - 33908197
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||||||| ||||| |||||||   ||||| | ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |    
T  33908302 gcagctgtgttatttatccgcctcctggtgttaggttttgctccaactcttgctgtttttggattgcattgcagat-ttctattggaaagcttcaacatg 33908204  T
Q  693 ttagtga 699  Q
    |||||||    
T  33908203 ttagtga 33908197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 25 - 490
Target Start/End: Original strand, 26172373 - 26172838
Alignment:
Q  25 acctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctacatgcaggcttgaagtg 124  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26172373 acctggcatataacacaagggtttgtcctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgctgcatgcaggcttgaagtg 26172472  T
Q  125 actaaagtaggtggctgtcaggcaaaaaccgagggaatatgccagggaaagcccctgggatgggaaaaaaggtgatgaatctctgcattgtttcctgttg 224  Q
    |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||    
T  26172473 actaaagtaggtggctgtcaggaaaaaaccaagggaatatgccaaggaaagcccttgggatgggaaaaaaggtgatgaatctctgctttgtttcttgttg 26172572  T
Q  225 atttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttcctgtcgttctgct 324  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  26172573 atttgacaaggctctgaaaagcatgtccggtccagttgagacaggggcaatacccctcgtttattgcatgaatccctggcttttttcctgccgttctgct 26172672  T
Q  325 gctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggcnnnnnnngctccctatataaatccatg 424  Q
     ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||    
T  26172673 actatctggtacctagctatatgctaggatttgaccaaccatgcgaggggcattccctcggataggccgtggctttttttgctccctatataaattcatg 26172772  T
Q  425 caccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattca 490  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26172773 caccgatcatgtaacaaacttcacaacacttataaaattttcttcacataaaacacaacacattca 26172838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 194 - 522
Target Start/End: Original strand, 7916403 - 7916731
Alignment:
Q  194 aggtgatgaatctctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7916403 aggtgatgaatctctgcattgtttcctgttgatttgacaaggctctgaaaagcctgtccggtccaattgagacaggggcaatacccctcgtttattgcgt 7916502  T
Q  294 gaatccctggcttttttcctgtcgttctgctgctatctgttacctagctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccg 393  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7916503 gaatccctggcttttttcctgtcgttctgctgctatctggtacctagttatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccg 7916602  T
Q  394 tggcnnnnnnngctccctatataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacacattcaaca 493  Q
    | ||       |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7916603 ttgctttttttgctccctatataaatccatgcaccgatcatgtaacagacttcacaacacttataaaattttcttcacataaaacataacacattcaaca 7916702  T
Q  494 tacttcatttatttggtaaaaaatacttc 522  Q
    |||||||||||||||||||||||||||||    
T  7916703 tacttcatttatttggtaaaaaatacttc 7916731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 7916278 - 7916407
Alignment:
Q  7 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaacccctcacttattgcaaggtgggaaattgaaattcaagaatctgct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7916278 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcacaaaaccc-tcacttattgcaaggtgggaaattgaaattcaagaatctgct 7916376  T
Q  107 acatgcaggcttgaagtgactaaagtaggtg 137  Q
     ||||||| ||||||||||||||||||||||    
T  7916377 gcatgcagacttgaagtgactaaagtaggtg 7916407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 593 - 699
Target Start/End: Original strand, 7916802 - 7916908
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7916802 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaataag 7916901  T
Q  693 ttagtga 699  Q
    |||||||    
T  7916902 ttagtga 7916908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 600 - 699
Target Start/End: Original strand, 26172961 - 26173060
Alignment:
Q  600 tgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagtga 699  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26172961 tgttacttatccgccgcctgtggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagtttgtga 26173060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 38705370 - 38705264
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||| ||||||||||||||||||||| |||| |||||||||| ||||| ||| |||||||||||||||||| |||||| ||| |||||||||||||||||    
T  38705370 gcagttgtgttacttatctgcctcctgtggtcagctattgcttcaactgttgttgtttttggattgcattggagatcttctagtgtaaagcttcaacaag 38705271  T
Q  693 ttagtga 699  Q
    |||||||    
T  38705270 ttagtga 38705264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 19763836 - 19763731
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||||||| ||||| ||||||| | ||||||| || |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  19763836 gcagctgtgttatttatccgcctcctgttgttagctttttctccaactcttgttgtttttggattgcattgcagat-ttctattgtaaagcttcaacaag 19763738  T
Q  693 ttagtga 699  Q
    |||||||    
T  19763737 ttagtga 19763731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 598 - 699
Target Start/End: Complemental strand, 7305512 - 7305412
Alignment:
Q  598 tgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagt 697  Q
    ||||||| ||||| |||||||   ||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  7305512 tgtgttatttatccgcctcctggtgttagcttttgctccaactcttgctgtttttggattgcattgcagat-ttctattgtaaagcttcaacaagttagt 7305414  T
Q  698 ga 699  Q
    ||    
T  7305413 ga 7305412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 241 - 522
Target Start/End: Original strand, 17738164 - 17738442
Alignment:
Q  241 aaaagcctgtccggtccagttgagacaggggcaatacccctcgtttattgcgtgaatccctggcttttttcctgtcgttctgctgctatctgttacctag 340  Q
    |||||| ||||||||| ||   |||||||||||| ||||||||   |||||  |||||||||||   ||||| | |||||||  ||||| || |||||||    
T  17738164 aaaagcatgtccggtctaggcaagacaggggcaaaacccctcggaaattgccagaatccctggcaaatttccagccgttctga-gctatatggtacctag 17738262  T
Q  341 ctatatgctaggatttgaccaagcatgcgaggggcattccctcggataggccgtggcnnnnnnngctccctatataaatccatgcaccgatcctgtaaca 440  Q
    |||||||||||||||||||||   |||||||||||  ||||||| ||| ||| || |        | |||||||||| | ||||||||  || | | |      
T  17738263 ctatatgctaggatttgaccagctatgcgaggggctgtccctcg-ataagccctg-cgattctttccccctatataattgcatgcaccagtcattttatc 17738360  T
Q  441 gacttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    || ||||||||||||| |||| ||||||| |||||||||||||||||||| || |||||||||| |||||||||||| ||||    
T  17738361 gatttcacaacacttagaaaaatttcttcccataaaacacaacacattcatcaaacttcatttacttggtaaaaaattcttc 17738442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 612 - 697
Target Start/End: Complemental strand, 21780459 - 21780374
Alignment:
Q  612 gcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagt 697  Q
    ||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| |  | |||||||||||||||||||||||    
T  21780459 gcctcctgtggtcagctattgccccaactcttgttgtttttggattgcattgcagatatttttttgtaaagcttcaacaagttagt 21780374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 612 - 697
Target Start/End: Complemental strand, 18341428 - 18341343
Alignment:
Q  612 gcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagt 697  Q
    ||||||| |||| ||||||||| ||| |||||| ||||||||||||| ||||||||| |  | ||||||||||| |||||||||||    
T  18341428 gcctcctgtggtcagctattgccccagctcttgttgtttttggattgaattgcagatatttttttgtaaagcttgaacaagttagt 18341343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 38705505 - 38705441
Alignment:
Q  458 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  38705505 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 38705441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 463 - 522
Target Start/End: Complemental strand, 21780608 - 21780549
Alignment:
Q  463 tttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||||||| ||||    
T  21780608 tttcttcacctaaaacacaaaaccttcatcaaacttcatttatttggtaaaaaattcttc 21780549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 26172841 - 26172879
Alignment:
Q  480 caacacattcaacatacttcatttatttggtaaaaaata 518  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  26172841 caacacattcaacaaacttcatttatttggtaaaaaata 26172879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 18341577 - 18341524
Alignment:
Q  463 tttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaa 516  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||||||    
T  18341577 tttcttcacttaaaacacaaaaccttcatcaaacttcatttatttggtaaaaaa 18341524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 17737948 - 17737993
Alignment:
Q  7 gaaaatgccaaggacaacacctggcatataacacaagggtttgccc 52  Q
    ||||||||||| || |||  ||||||||||||||||||||||||||    
T  17737948 gaaaatgccaacgataacctctggcatataacacaagggtttgccc 17737993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 103; Significance: 7e-51; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 1245 - 1139
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1245 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctagtgtaaagcttcaacaag 1146  T
Q  693 ttagtga 699  Q
    |||||||    
T  1145 ttagtga 1139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 412 - 522
Target Start/End: Complemental strand, 1439 - 1316
Alignment:
Q  412 atataaatccatgcaccgatcctgtaacagacttcacaacacttataaaattttcttcacataaaacacaacaca-------------ttcaacatactt 498  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||             ||||||||||||    
T  1439 atataaatccatgcaccgatcatgtaacagacttcacaacgcttataaaattttcttcgcataaaacacaacacattcactcaacacattcaacatactt 1340  T
Q  499 catttatttggtaaaaaatacttc 522  Q
    ||||||||||||||||||||||||    
T  1339 catttatttggtaaaaaatacttc 1316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 6e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 37392685 - 37392579
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||| ||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37392685 gcagctgttttatttatccgcctcctgttgttagctattgctccaactcttgctgtttttggattgcattgcagatcttctattgtaaagcttcaacaag 37392586  T
Q  693 ttagtga 699  Q
    |||||||    
T  37392585 ttagtga 37392579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 11881631 - 11881525
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||| ||| ||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11881631 gcagctgttttatttatccgcctcctgttgttagctattgctgcaactcttgctgtttttggattgcattgcagatcttctattgtaaagcttcaacaag 11881532  T
Q  693 ttagtga 699  Q
    |||||||    
T  11881531 ttagtga 11881525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 593 - 699
Target Start/End: Original strand, 40654840 - 40654945
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||||||| ||||| |||||||   ||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  40654840 gcagctgtgttatttatccgcctcctggtgttagtttttgctccaactcttgctgtttttggattgcattgcagat-ttctattgtaaagcttcaacaag 40654938  T
Q  693 ttagtga 699  Q
    |||||||    
T  40654939 ttagtga 40654945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 593 - 699
Target Start/End: Original strand, 35593868 - 35593973
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||||||| ||||| |||||||   ||||| | ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |    
T  35593868 gcagctgtgttatttatccgcctcctggtgttaggttttgctccaactcttgctgtttttggattgcattgcagat-ttctattggaaagcttcaacatg 35593966  T
Q  693 ttagtga 699  Q
    |||||||    
T  35593967 ttagtga 35593973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 594 - 699
Target Start/End: Complemental strand, 4968455 - 4968351
Alignment:
Q  594 cagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagt 693  Q
    ||||||||||| ||||| |||||||   ||||| | ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||    
T  4968455 cagctgtgttatttatccgcctcctggtgttaggttttgctccaactcttgctgtttttggattgcattgcagat-ttctattggaaagcttcaacatgt 4968357  T
Q  694 tagtga 699  Q
    ||||||    
T  4968356 tagtga 4968351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 604 - 699
Target Start/End: Complemental strand, 35630639 - 35630544
Alignment:
Q  604 acttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagtga 699  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  35630639 acttatctgcctcatgtggttagctattgctccaactcttgctgtttttggattgcattgcagatctactattgtaaagcttcaacaaattagtga 35630544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 11722075 - 11721970
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||||||| ||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  11722075 gcagctgtgttatttatccgcctcctgttgttagcttttgctccaactcttgctgtttttggattgcattgcagat-ttctattgtaaagcttcaacaag 11721977  T
Q  693 ttagtga 699  Q
    |||||||    
T  11721976 ttagtga 11721970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 515
Target Start/End: Complemental strand, 35068986 - 35068914
Alignment:
Q  442 acttcacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaa 515  Q
    |||||| |||||||| |||||||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  35068986 acttcagaacacttagaaaattttcttcacataaaacacaacac-ttcatcaaacttcatttatttggtaaaaa 35068914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 35631429 - 35631380
Alignment:
Q  7 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcac 56  Q
    ||||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  35631429 gaaaatgtcaaggataacacctggcatataacagaagggtttgccctcac 35631380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 522
Target Start/End: Original strand, 9763711 - 9763775
Alignment:
Q  458 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    |||||||||||||| |||| ||||| || |||| || ||||||||||||||||||||||| ||||    
T  9763711 aaaattttcttcacctaaaccacaaaaccttcatcaaacttcatttatttggtaaaaaattcttc 9763775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 35630766 - 35630725
Alignment:
Q  477 acacaacacattcaacatacttcatttatttggtaaaaaata 518  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  35630766 acacaacacattcatcaaacttcatttatttggtaaaaaata 35630725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 38972826 - 38972720
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||| ||||||||||||||||||||| |||| |||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  38972826 gcagttgtgttacttatctgcctcctgtggtcagctattgcttcaactgttgttgtttttggattgcattgcagatcttctattgtaaagcttcaacaag 38972727  T
Q  693 ttagtga 699  Q
    |||||||    
T  38972726 ttagtga 38972720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 620 - 699
Target Start/End: Original strand, 5323229 - 5323308
Alignment:
Q  620 tggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagtga 699  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  5323229 tggttagctattgctccaactcttgctgtttttggattgcattacagatctactattgtaaagcttcaacaagttagtga 5323308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 16923876 - 16923771
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||||||||||| ||||| ||||||| | ||||||| || |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  16923876 gcagctgtgttatttatccgcctcctgttgttagctttttctccaactcttgttgtttttggattgcattgcagat-ttctattgtaaagcttcaacaag 16923778  T
Q  693 ttagtga 699  Q
    |||||||    
T  16923777 ttagtga 16923771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 446 - 522
Target Start/End: Original strand, 14779474 - 14779550
Alignment:
Q  446 cacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||    
T  14779474 cacaagacttagaaaatttccttcacataaaacacaacatattcatcaaacttcatttatttggtaaaaaattcttc 14779550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 5322712 - 5322761
Alignment:
Q  7 gaaaatgccaaggacaacacctggcatataacacaagggtttgccctcac 56  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5322712 gaaaatgccaaggataacccctggcatataacacaagggtttgccctcac 5322761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 38972961 - 38972897
Alignment:
Q  458 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  38972961 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 38972897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 5323086 - 5323127
Alignment:
Q  477 acacaacacattcaacatacttcatttatttggtaaaaaata 518  Q
    |||||||||||||| || |||||||||||||| |||||||||    
T  5323086 acacaacacattcatcaaacttcatttatttgataaaaaata 5323127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 598 - 699
Target Start/End: Complemental strand, 699 - 598
Alignment:
Q  598 tgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaagttagt 697  Q
    ||||||||||||||||||||| |||| ||||||||  | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  699 tgtgttacttatctgcctcctgtggtcagctattgtccaaactcttgttgtttttggattgcattgcagatcttctattgtaaagcttcaacaagttagt 600  T
Q  698 ga 699  Q
    ||    
T  599 ga 598  T

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Target: scaffold0260; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 452 - 522
Target Start/End: Complemental strand, 845 - 775
Alignment:
Q  452 acttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    ||||| |||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||| ||||    
T  845 acttagaaaattttcttcacttaaaacacaacaccttcatcaaacttcatttatttggtaaaaaattcttc 775  T

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Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 33891350 - 33891244
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattgtaaagcttcaacaag 692  Q
    |||| ||||||||||||||||||||| |||| || ||||||| ||||| ||| |||||||||||||||||| |||||| ||| |||||||||||||||||    
T  33891350 gcagttgtgttacttatctgcctcctgtggtcagttattgcttcaactgttgttgtttttggattgcattggagatcttctagtgtaaagcttcaacaag 33891251  T
Q  693 ttagtga 699  Q
    |||||||    
T  33891250 ttagtga 33891244  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 593 - 699
Target Start/End: Complemental strand, 37574347 - 37574238
Alignment:
Q  593 gcagctgtgttacttatctgcctcctttggttagctattgctccaactcttgctgtttttggattgcattgcagatctgctattg---taaagcttcaac 689  Q
    |||| ||||||||||||||||||||| |||| |||||||||| ||||| ||| |||||||||||||||||| |||||| ||| ||   ||||||||||||    
T  37574347 gcagttgtgttacttatctgcctcctgtggtcagctattgcttcaactgttgttgtttttggattgcattggagatcttctagtgtaataaagcttcaac 37574248  T
Q  690 aagttagtga 699  Q
    ||||||||||    
T  37574247 aagttagtga 37574238  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 33891485 - 33891421
Alignment:
Q  458 aaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    |||||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  33891485 aaaattttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 33891421  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 522
Target Start/End: Complemental strand, 37574479 - 37574418
Alignment:
Q  461 attttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    ||||||||| | |||||| |||||| |||| || ||||||||| ||||||||||||||||||    
T  37574479 attttcttctcttaaaactcaacactttcatcaaacttcatttctttggtaaaaaatacttc 37574418  T

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Target: scaffold0005 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 446 - 522
Target Start/End: Complemental strand, 60256 - 60180
Alignment:
Q  446 cacaacacttataaaattttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaatacttc 522  Q
    ||||| ||||| ||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||    
T  60256 cacaagacttagaaaatttccttcacataaaacacaacatattcatcaaacttcatttatttggtaaaaaattcttc 60180  T

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Target: scaffold1414 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 516
Target Start/End: Original strand, 1678 - 1731
Alignment:
Q  463 tttcttcacataaaacacaacacattcaacatacttcatttatttggtaaaaaa 516  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||||||    
T  1678 tttcttcacctaaaacacaaaaccttcatcaaacttcatttatttggtaaaaaa 1731  T

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