View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_303 (Length: 230)
Name: NF11309A_low_303
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_303 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 36971100 - 36970896
Alignment:
| Q |
6 |
gaacgatgaaggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagcaaacag |
105 |
Q |
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| T |
36971100 |
gaacgatgagggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagcaaacag |
36971001 |
T |
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| Q |
106 |
ttgatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggatgata |
205 |
Q |
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| T |
36971000 |
ttgatgcaagaatgtgcgacagaattcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggacgata |
36970901 |
T |
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| Q |
206 |
tctgt |
210 |
Q |
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||||| |
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| T |
36970900 |
tctgt |
36970896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 39786381 - 39786325
Alignment:
| Q |
148 |
ggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatggggatgat |
204 |
Q |
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| T |
39786381 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgatgat |
39786325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 56067978 - 56068049
Alignment:
| Q |
108 |
gatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaa |
179 |
Q |
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| T |
56067978 |
gatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaa |
56068049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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