View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_306 (Length: 230)
Name: NF11309A_low_306
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_306 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7128000 - 7127761
Alignment:
| Q |
1 |
ggtgatggtttaactgctaactcttgaagtggttgttggatagtgaaactttatgtattgcagaattggttgacaatattccgattgagtggct------ |
94 |
Q |
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| T |
7128000 |
ggtgatggtttaactgctaactcttgaagtggttgttggatagtgaaactttatgtattgcagaattggttgacaatattccgattgagtggctgtatac |
7127901 |
T |
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| Q |
95 |
----------attagatattgattgttgttggctagaggatcgtttgaattgcctcccggaagaagttaagctctgtatcaagtccattttagagcatcg |
184 |
Q |
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| T |
7127900 |
gaaagtggctattagatattgattgttgttggctagaggatcgtttgaattgcctcccggaagaagttaagctccgtatcaagtccattttagagcatcg |
7127801 |
T |
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| Q |
185 |
gcaccatggttttggattcgcgaactagcaaaggattcta |
224 |
Q |
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| T |
7127800 |
gcaccatggttttggattcgcgaactagcaaaggattcta |
7127761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7133265 - 7133173
Alignment:
| Q |
1 |
ggtgatggtttaactgctaactcttgaagtggttgttgga-tagtgaaactttatgtattgcagaattggttgacaatattccgattgagtggc |
93 |
Q |
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| T |
7133265 |
ggtgatggtttaaatgctaacgcttggagtagtttttggagtagtgaaa-tttatgtattgcagaagtggttgacaatattctgattgagtggc |
7133173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 7124697 - 7124614
Alignment:
| Q |
88 |
agtggctattagatattgattgttgttggctagaggatcgtttgaattgcctcccggaagaagttaagctctgtatcaagtccatt |
173 |
Q |
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| T |
7124697 |
agtggctat-agatattgatggttgttggctaaaggatcgtttgaattggct-ccggaggaagtgaagctccatatcaggtccatt |
7124614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 7124141 - 7124092
Alignment:
| Q |
175 |
tagagcatcggcaccatggttttggattcgcgaactagcaaaggattcta |
224 |
Q |
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|||| ||||||| || ||||||||| ||||| |||||||||||||||||| |
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| T |
7124141 |
tagaccatcggcgccttggttttgggttcgcaaactagcaaaggattcta |
7124092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 7133151 - 7133078
Alignment:
| Q |
100 |
atattgattgttgttggctagaggatcgtttgaattgcctcccggaagaagttaagctctgtatcaagtccatt |
173 |
Q |
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| T |
7133151 |
atattcatggttgttagctagaggatcatttgaattggcttctggaggaagttaagctcggcatcaggtccatt |
7133078 |
T |
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