View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_307 (Length: 230)
Name: NF11309A_low_307
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_307 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44952258 - 44952478
Alignment:
| Q |
1 |
gtagtcactctactcgatcgatgtccatatatgtgacgcacaaaacaacataggagtgttgcatggtagcttctgacatcgtgaattaagtactgcctat |
100 |
Q |
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| T |
44952258 |
gtagtcattctactcgatcgatgtccatatatgtgacacacaaaacaacataggagt--tgcatggtagcttctgacatcgtgaattaagtactgcctat |
44952355 |
T |
|
| Q |
101 |
gtcacttaggaattcccctctcattgttctcatgtgatccaacaaatagatccacatctagtgtgtttgtgttccccgcacttaggtttgtcaagatatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44952356 |
gtcacttaggaattcccctctcattgttctcatgtgatccaacaaatagatccacatctagtgtgtttgtgttccccacacttaggtttgtcaagatatg |
44952455 |
T |
|
| Q |
201 |
atgaccacttacacacacatactt |
224 |
Q |
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||||||| ||| |||||||||||| |
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| T |
44952456 |
atgacca-ttaaacacacatactt |
44952478 |
T |
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