View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_308 (Length: 230)

Name: NF11309A_low_308
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_308
NF11309A_low_308
[»] chr8 (13 HSPs)
chr8 (21-219)||(17722420-17722608)
chr8 (33-219)||(35948827-35949013)
chr8 (86-219)||(7956340-7956473)
chr8 (86-219)||(44223327-44223460)
chr8 (86-191)||(3767684-3767789)
chr8 (33-170)||(9505015-9505153)
chr8 (77-191)||(16570890-16571003)
chr8 (86-191)||(34760834-34760940)
chr8 (33-170)||(32321799-32321936)
chr8 (134-208)||(9040513-9040587)
chr8 (33-85)||(7956464-7956516)
chr8 (82-118)||(8266063-8266099)
chr8 (33-85)||(44223451-44223503)
[»] chr1 (11 HSPs)
chr1 (33-219)||(16584864-16585050)
chr1 (87-219)||(25785805-25785937)
chr1 (78-219)||(1161433-1161573)
chr1 (57-219)||(8084010-8084173)
chr1 (88-219)||(11619973-11620104)
chr1 (97-219)||(18461173-18461295)
chr1 (33-191)||(42009997-42010155)
chr1 (76-191)||(512996-513111)
chr1 (32-125)||(32678514-32678607)
chr1 (78-216)||(11911629-11911768)
chr1 (41-123)||(8414674-8414756)
[»] chr4 (7 HSPs)
chr4 (33-212)||(23107918-23108097)
chr4 (36-219)||(4413456-4413640)
chr4 (56-219)||(24466315-24466478)
chr4 (55-219)||(28319290-28319454)
chr4 (41-170)||(53393204-53393333)
chr4 (84-170)||(8606181-8606267)
chr4 (33-122)||(39839064-39839153)
[»] chr5 (6 HSPs)
chr5 (32-209)||(16746550-16746727)
chr5 (33-205)||(31895896-31896068)
chr5 (92-219)||(16746421-16746548)
chr5 (36-219)||(19947711-19947894)
chr5 (55-170)||(1498243-1498358)
chr5 (78-184)||(29126128-29126234)
[»] scaffold0879 (1 HSPs)
scaffold0879 (56-219)||(580-743)
[»] chr7 (9 HSPs)
chr7 (55-219)||(7352370-7352533)
chr7 (32-219)||(39695086-39695268)
chr7 (94-219)||(46993309-46993434)
chr7 (86-216)||(7994998-7995128)
chr7 (88-219)||(11727328-11727449)
chr7 (33-191)||(48070614-48070772)
chr7 (33-170)||(3996991-3997128)
chr7 (65-169)||(46265353-46265457)
chr7 (65-205)||(2922986-2923125)
[»] chr3 (8 HSPs)
chr3 (33-219)||(46655514-46655701)
chr3 (36-184)||(44471020-44471168)
chr3 (53-208)||(11503337-11503492)
chr3 (32-184)||(30554574-30554726)
chr3 (77-130)||(46892648-46892701)
chr3 (88-184)||(779533-779629)
chr3 (72-170)||(27524056-27524154)
chr3 (78-164)||(44285605-44285691)
[»] chr2 (10 HSPs)
chr2 (55-212)||(31111435-31111592)
chr2 (86-219)||(4638207-4638340)
chr2 (55-212)||(13852276-13852433)
chr2 (33-191)||(29109190-29109348)
chr2 (152-219)||(36009278-36009345)
chr2 (55-217)||(3919857-3920019)
chr2 (55-152)||(12893980-12894077)
chr2 (78-164)||(37630375-37630461)
chr2 (86-208)||(38607020-38607141)
chr2 (41-170)||(5526225-5526353)
[»] scaffold0565 (1 HSPs)
scaffold0565 (93-219)||(1844-1970)
[»] chr6 (6 HSPs)
chr6 (79-169)||(7176529-7176619)
chr6 (63-170)||(23301441-23301548)
chr6 (88-190)||(7551423-7551525)
chr6 (63-191)||(23300455-23300583)
chr6 (53-123)||(11971476-11971546)
chr6 (93-170)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (33-123)||(33729-33819)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 17722608 - 17722420
Alignment:
Q  21 atcaacgagagataggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcg 120  Q
    ||||||||||||||||||| ||| |||| || |||||||||||||||||| |||||||||||| |          |||||||||||||||||||||||||    
T  17722608 atcaacgagagataggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccgga----------aaaatatccaaccttgtttggttcg 17722519  T
Q  121 gtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17722518 gtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatgat 17722420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 35948827 - 35949013
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||||| | || | |||||||| |||| || |||||||||  |||||||| | ||||||||||| || |||||||||||||||||||||| |    
T  35948827 taggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccga 35948926  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    ||||||  | || ||| ||||||||||||||||| |||||| ||||| |||||||||||  ||||||||||||||||||||||||||    
T  35948927 tccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatgat 35949013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 7956473 - 7956340
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    ||||||||||||||||| | |||||| || ||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||||| ||||     
T  7956473 ccaaaccgaaaaaatattcgaccttgctttgtttggtttgaaaccgattcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttt 7956374  T
Q  186 gagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    ||||| ||||||||||||||||||||||||||||    
T  7956373 gagatatgtgaaaccgatgaaccaatccgatgat 7956340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 44223460 - 44223327
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    |||||||||||||||||   | |||||||||||| |||| ||||| ||| |||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  44223460 ccaaaccgaaaaaatatatgatcttgtttggttcagtttaaaaccgatctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttcatttc 44223361  T
Q  186 gagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    |||||| |||||||||||||||||||||||||||    
T  44223360 gagatccgtgaaaccgatgaaccaatccgatgat 44223327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 3767789 - 3767684
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    ||||||||||||| ||||| ||||||||| ||||||||  ||||| | |||||| |||| |||||||||||||||||||||||||  | ||||||||||     
T  3767789 ccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaatctaaaccgatctagtttggtttggttctcggttttttatttt 3767690  T
Q  186 gagatc 191  Q
    ||||||    
T  3767689 gagatc 3767684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 9505015 - 9505153
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaacca 131  Q
    ||||||| ||||||||  | |||||||| ||||||||| || |||||||| ||||||| |||||| ||||||||||||||||||||||| ||  ||| |     
T  9505015 taggggtgtaagtggtttggataaaaccgatgaaaccgaaaatccaaacctaaccaaaacgaaaaaaatatccaaccttgtttggttcgattcaaaatcg 9505114  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
    | |||||| || | |||||||| |||||||||| |||||    
T  9505115 aaccgaaccaaccaaaaccgatatagtttggttcggttc 9505153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 16571003 - 16570890
Alignment:
Q  77 caaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatt 176  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| | || ||| || | ||||||||||| ||||||| |||||  ||||    
T  16571003 caaaccgaaccaaacc-aaaaaatatccaaccttgtttggtttggttcaaaaccgaaccaaaccaacctaaaccgatctaatttggttaggttctcgatt 16570905  T
Q  177 ttttatttcgagatc 191  Q
    ||| |||| ||||||    
T  16570904 tttaattttgagatc 16570890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 34760940 - 34760834
Alignment:
Q  86 ccaaaccgaaaaaa-tatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 184  Q
    |||||||||||||| ||||  | ||||||||||||||||  ||| | | |||||| || | ||||||||||||||||||||||||| || ||||| ||||    
T  34760940 ccaaaccgaaaaaagtatctgatcttgtttggttcggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggtttggttcttggtttttgattt 34760841  T
Q  185 cgagatc 191  Q
     ||||||    
T  34760840 tgagatc 34760834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 32321799 - 32321936
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    |||||||  ||||||| || |||||||  ||||||||| ||  | ||||| || |||||||||||| ||| | ||||||||||||||||||| ||| |||    
T  32321799 taggggtgcaagtggttcggataaaactgatgaaaccgaaaacctaaaccaaatcaaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaa 32321898  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
     |||||  ||   ||||||||||| ||||||| |||||    
T  32321899 accgaatcaacataaaccgatctaatttggttcggttc 32321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 9040513 - 9040587
Alignment:
Q  134 ccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 208  Q
    |||||| |||| |||||||||| ||||||||||||||  | ||||| |||| |||||||  ||||||||||||||    
T  9040513 ccgaaccaatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 7956516 - 7956464
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaa 85  Q
    ||||||| |||||||| || | |||||||| ||||||| ||||||||||||||    
T  7956516 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa 7956464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 8266063 - 8266099
Alignment:
Q  82 cgaaccaaaccgaaaaaatatccaaccttgtttggtt 118  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  8266063 cgaaccaaaccgaaaaagtatccaaccttatttggtt 8266099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 44223503 - 44223451
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaa 85  Q
    ||||||| |||||||| || | |||||||| ||||||| ||||||||||||||    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa 44223451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 33 - 219
Target Start/End: Complemental strand, 16585050 - 16584864
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||||||| || | |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16585050 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16584951  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||    
T  16584950 tccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatgat 16584864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 25785805 - 25785937
Alignment:
Q  87 caaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcg 186  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  25785805 caaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcg 25785904  T
Q  187 agatctgtgaaaccgatgaaccaatccgatgat 219  Q
    ||||| |||||||||||||||||||||||||||    
T  25785905 agatccgtgaaaccgatgaaccaatccgatgat 25785937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 1161573 - 1161433
Alignment:
Q  78 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattt 177  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| |||    
T  1161573 aaaccgaaccaaaccgaaaaa-tatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatctagtttggtttggttcatggttt 1161475  T
Q  178 tttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    || ||||||| ||| |||||||||||||||||||||||||||    
T  1161474 ttcatttcgatatccgtgaaaccgatgaaccaatccgatgat 1161433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 8084010 - 8084173
Alignment:
Q  57 aaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatct 155  Q
    |||||| |||| || ||||||||||  || ||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  8084010 aaccaacgaaatcgaaagtccaaactaaatcaaaccgaaaaaaatatccgaccttgtttggtttggtttgaaaccaatccgaaccaatcgaaaccgatct 8084109  T
Q  156 agtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    |||||||||||||||||| ||||| ||||| ||||| ||||||| |||||| ||||||||||||    
T  8084110 agtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgat 8084173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 11619973 - 11620104
Alignment:
Q  88 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 187  Q
    ||||| ||||||||||| | |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||| ||    
T  11619973 aaaccaaaaaaatatccgatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttga 11620072  T
Q  188 gatctgtgaaaccgatgaaccaatccgatgat 219  Q
    ||||||||||||||||||||||||||||||||    
T  11620073 gatctgtgaaaccgatgaaccaatccgatgat 11620104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 18461173 - 18461295
Alignment:
Q  97 aaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtga 196  Q
    |||||||| ||||||||| ||||||||| ||| | ||| | || |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  18461173 aaatatccgaccttgtttagttcggtttcaaatcgatctggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtga 18461272  T
Q  197 aaccgatgaaccaatccgatgat 219  Q
    |||||||||||||||||||||||    
T  18461273 aaccgatgaaccaatccgatgat 18461295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 42010155 - 42009997
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||| ||| || || ||||||| |||||||  ||||||||| | |||||||||||||||||||| || |||||||||||||||||||||| |    
T  42010155 taggggtgtaagcggttcggattaaaccaacgaaaccgatagtccaaactggaccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccga 42010056  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
    ||| ||| ||| |||||||||||||||| |||||  ||||| ||||| |||| ||||||    
T  42010055 tccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatc 42009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 512996 - 513111
Alignment:
Q  76 ccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgat 175  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||||||  ||||||| |||||| || | |||||||||||||||| || | ||| | ||    
T  512996 ccaaatcgaaccaaaccgaaaaagtatccaatcttgtttggttcggttcaaaaccaaaccgaaccaacctaaaccgatctagtttgattcgattcttaat 513095  T
Q  176 tttttatttcgagatc 191  Q
    |||| |||| ||||||    
T  513096 ttttaattttgagatc 513111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 32678607 - 32678514
Alignment:
Q  32 ataggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttg 125  Q
    |||| ||| |||||||| |||| |||||| |||||| || || | |||||||||| || |||||||||||||| ||||||||||||| ||||||    
T  32678607 atagaggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaactaagccgaaaaaatatccgaccttgtttggtttggtttg 32678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 11911629 - 11911768
Alignment:
Q  78 aaaccgaaccaaaccgaaaaaa-tatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatt 176  Q
    ||||| ||||||  |||||||| ||||| ||||||||||||||||||  ||||| | |||||| || | |||||||||||||||| ||| |||| || ||    
T  11911629 aaaccaaaccaattcgaaaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggtt 11911728  T
Q  177 ttttatttcgagatctgtgaaaccgatgaaccaatccgat 216  Q
    ||| |||| || ||| |   |||||||||||||| |||||    
T  11911729 tttaattttgaaatccgatgaaccgatgaaccaaaccgat 11911768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 8414756 - 8414674
Alignment:
Q  41 taagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 123  Q
    |||||||| || | |||||| ||||||| | || ||||||| |||| ||||||||||| ||||| ||||||||||||| ||||    
T  8414756 taagtggttcggacaaaaccgatgaaactgaaaatccaaactgaacaaaaccgaaaaagtatccgaccttgtttggtttggtt 8414674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 23108097 - 23107918
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||||||| || | |||||||| ||||||| |||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||| |    
T  23108097 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccga 23107998  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 212  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  23107997 tccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatc 23107918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 4413456 - 4413640
Alignment:
Q  36 gggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatc 134  Q
    |||| |||||||| || |||||||||| ||||||  |||| ||||| |||| | |||||||| ||||||| | ||||||||||||||||| ||||| |||    
T  4413456 gggtgtaagtggttcggataaaaccaacgaaaccaaaagttcaaactgaactagaccgaaaaaaatatccgatcttgtttggttcggtttaaaaccgatc 4413555  T
Q  135 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||    
T  4413556 cgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaatccgatgat 4413640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 56 - 219
Target Start/End: Complemental strand, 24466478 - 24466315
Alignment:
Q  56 aaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatct 155  Q
    ||||||| |||||||  ||||||||||  ||||||| |||||||||||  | ||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  24466478 aaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatct 24466379  T
Q  156 agtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    |||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||    
T  24466378 agtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgat 24466315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 28319454 - 28319290
Alignment:
Q  55 aaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 154  Q
    |||||||| |||| || ||||| ||| ||||||||||||||||||||||  || ||||||||||||||||||||||  ||||||| |||| ||| ||||     
T  28319454 aaaaccaacgaaatcgaaagtctaaatcgaaccaaaccgaaaaaatatctgacattgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatt 28319355  T
Q  155 tagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    || |||||||||||||||| ||||| ||||||||||  ||||| | |||||| ||||| ||||||    
T  28319354 taatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaatctgatgat 28319290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 53393333 - 53393204
Alignment:
Q  41 taagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 140  Q
    |||||||| || | |||||| ||||||||| || |||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||  | ||||||     
T  53393333 taagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccgaacc 53393234  T
Q  141 aatcgaaaccgatctagtttggtttggttc 170  Q
    || | ||||||||||||||||||| |||||    
T  53393233 aacctaaaccgatctagtttggttcggttc 53393204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 8606267 - 8606181
Alignment:
Q  84 aaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
    ||||||||||||||| |||||||| |||||||| ||||||  |||||||  ||||| |||| |||||||||| | |||||| |||||    
T  8606267 aaccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatcgaaccaatctaaaccgatcttggttggttcggttc 8606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 39839153 - 39839064
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggt 122  Q
    ||||||| |||||||| || |  ||||| ||||||||| || |||||||| || ||||| |||||| |||   |||||||||||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaaccaaatcaaactgaaaaagtatttgaccttgtttggttcggt 39839064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 16746727 - 16746550
Alignment:
Q  32 ataggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||| | |||||||| || | |||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  16746727 atagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16746628  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacca 209  Q
    |||| ||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||||||||||    
T  16746627 atccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 31895896 - 31896068
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||||||| || | ||||||||  ||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccga 31895995  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatga 205  Q
    || |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31895996 tctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 16746548 - 16746421
Alignment:
Q  92 cgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  16746548 cgaaaaaatatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatc 16746449  T
Q  192 tgtgaaaccgatgaaccaatccgatgat 219  Q
     |||||| ||||||||||||||||||||    
T  16746448 cgtgaaatcgatgaaccaatccgatgat 16746421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 19947711 - 19947894
Alignment:
Q  36 gggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 135  Q
    |||| |||||||| || | |||| ||| ||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||    
T  19947711 gggtgtaagtggttcggacaaaatcaacgaatccgaaagtccaaaccgaaccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatcc 19947810  T
Q  136 gaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
     ||| ||||||| | |||||| |||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||    
T  19947811 aaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaatccgatgat 19947894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 1498358 - 1498243
Alignment:
Q  55 aaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 154  Q
    |||||| ||||||||| || ||||||||||| ||||| || ||||||||| ||||||||||||||||||  ||||| | | |||| || | ||||||||     
T  1498358 aaaaccgatgaaaccgaaaatccaaaccgaatcaaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacctaaaccgatg 1498259  T
Q  155 tagtttggtttggttc 170  Q
    |||||  |||||||||    
T  1498258 tagttaagtttggttc 1498243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 29126128 - 29126234
Alignment:
Q  78 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattt 177  Q
    ||||||||||||||||||||| ||||| |  |||||||| || |||||||||| | |  ||| || | |||||| |||||||| |||||||||   ||||    
T  29126128 aaaccgaaccaaaccgaaaaagtatccgattttgtttgggtcagtttgaaaccgaactaaaccaacctaaaccggtctagtttagtttggttctcaattt 29126227  T
Q  178 tttattt 184  Q
    |||||||    
T  29126228 tttattt 29126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 56 - 219
Target Start/End: Complemental strand, 743 - 580
Alignment:
Q  56 aaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatct 155  Q
    ||||||| |||||||  ||||||||||  ||||||| |||||||||||  | ||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  743 aaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatct 644  T
Q  156 agtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    |||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||    
T  643 agtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgat 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 7352533 - 7352370
Alignment:
Q  55 aaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 154  Q
    |||||||| ||||||| ||||||||| | |||| |||||||||||||||| || || ||||||| ||||||||||| |||||||| ||||||||||| ||    
T  7352533 aaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccgatccgaaccaatcgaaaccggtc 7352434  T
Q  155 tagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||||||    
T  7352433 tagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgat 7352370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 219
Target Start/End: Original strand, 39695086 - 39695268
Alignment:
Q  32 ataggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||||| |||||||| ||   |||||||| ||||||| |||||||| ||     |||||||| | |||||| |||||||||||||||||||||||||     
T  39695086 ataggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaaccc-----aaaccgaagagatatccgaccttgtttggttcggtttgaaaccg 39695180  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    ||| |||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||    
T  39695181 atctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatgat 39695268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 46993309 - 46993434
Alignment:
Q  94 aaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctg 193  Q
    ||||||||| | ||||||||||| |||||||||||   |||||||  ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |    
T  46993309 aaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 46993408  T
Q  194 tgaaaccgatgaaccaatccgatgat 219  Q
    |||||||||| |||||||||||||||    
T  46993409 tgaaaccgattaaccaatccgatgat 46993434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 7994998 - 7995128
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    |||||| ||||||||||   ||||||||||||||||||  ||| | |||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||     
T  7994998 ccaaactgaaaaaatatttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt 7995097  T
Q  186 gagatctgtgaaaccgatgaaccaatccgat 216  Q
    |||||  ||||||||||||||||||||||||    
T  7995098 gagattcgtgaaaccgatgaaccaatccgat 7995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 11727449 - 11727328
Alignment:
Q  88 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 187  Q
    |||||||||||||||   |||||||||||||||||||||||||||||           ||||||||||||||||||||||||| || ||||| |||||||    
T  11727449 aaaccgaaaaaatatatgaccttgtttggttcggtttgaaaccaatca----------aaaccgatctagtttggtttggttcgtggtttttcatttcga 11727360  T
Q  188 gatctgtgaaaccgatgaaccaatccgatgat 219  Q
    |||| || |||||||| |||||||||||||||    
T  11727359 gatccgtaaaaccgataaaccaatccgatgat 11727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 48070614 - 48070772
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||||||| || | |||| | || |||||| || || ||||||||| ||||| ||||||||||| |||||||||| || ||||  ||||| |    
T  48070614 taggggtgtaagtggttcggacaaaatcgatcaaaccgaaaatctaaaccgaactaaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccga 48070713  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
     ||||||||| | |||||||||||||||| || |||||  | ||||| |||| ||||||    
T  48070714 accgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttgagatc 48070772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 3997128 - 3996991
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||||||| || | |||||||||||||||| |||||||||||| ||||||||||| ||  |||| || |||||||||| ||||  ||||| |    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaagaagaatccgactttgtttggtttggttcaaaaccga 3997029  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
     || ||| |||| ||||| | || |||||||| |||||    
T  3997028 acctaaccaatctaaaccaaccttgtttggttcggttc 3996991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 46265457 - 46265353
Alignment:
Q  65 aaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 164  Q
    |||||| ||||||||||||||||||||| ||||  ||||| |||||||  |||||||||  ||||| | |||||  |||| |||||||||| ||||||||    
T  46265457 aaaccgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtt 46265358  T
Q  165 tggtt 169  Q
    |||||    
T  46265357 tggtt 46265353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 2922986 - 2923125
Alignment:
Q  65 aaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 164  Q
    |||||| |||||||||| |||||||||| ||||  ||| ||||||||| ||||||||||  ||||| | |||||| |||| | ||||| || ||||| ||    
T  2922986 aaaccgaaagtccaaac-gaaccaaaccaaaaatgtattcaaccttgtatggttcggttcaaaaccgaaccgaaccaatctacaccgaccttgtttgatt 2923084  T
Q  165 tggttcatgattttttatttcgagatctgtgaaaccgatga 205  Q
     ||||| |||||||| |||| ||||||   |||||||||||    
T  2923085 cggttcttgatttttcattttgagatccaagaaaccgatga 2923125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 219
Target Start/End: Original strand, 46655514 - 46655701
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||||  ||||||| || ||||| |||| |||| || || ||| |||| ||||||||| |||| ||||||| |||||  ||||||||||||||||||     
T  46655514 taggggtgcaagtggttcggataaatccaacgaaatcgaaaatccgaaccaaaccaaaccaaaaaaaatatccgaccttacttggttcggtttgaaaccg 46655613  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    |||||||| |||| ||||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||    
T  46655614 atccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 46655701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 44471020 - 44471168
Alignment:
Q  36 gggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 135  Q
    |||| |||||||| || | |||||| |||||| || || |||||||||||||||||||||||  ||||| ||||||||| ||||||||  ||||| | ||    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaacc 44471119  T
Q  136 gaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 184  Q
     ||| |||| ||||||||||||||||||| ||||| || ||||| ||||    
T  44471120 aaaccaatctaaaccgatctagtttggttcggttcttggtttttaattt 44471168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 11503492 - 11503337
Alignment:
Q  53 ataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccga 152  Q
    |||||||| ||||||| | ||||||||||||||||||||| ||||  ||||| ||||||| ||||  ||||  ||||| | |||||| ||||||||||||    
T  11503492 ataaaaccgatgaaactgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccgaaccgaaccaatcgaaaccga 11503393  T
Q  153 tctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 208  Q
    |||  |||||||||||||  ||||||| |||| ||||||   ||||||||| ||||    
T  11503392 tcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaacc 11503337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 30554726 - 30554574
Alignment:
Q  32 ataggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||||| ||| |||| |||| |||| | ||||||||| || |||||| ||| | ||||||||||| ||||| ||||||||| ||||||||  ||| |     
T  30554726 ataggggtgtaaatggttcgaacaaaatcgatgaaaccgaaaatccaaatcgagctaaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcg 30554627  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 184  Q
    | |||||| |||| ||||||||||||||||||| |||||  ||||||| ||||    
T  30554626 aaccgaaccaatctaaaccgatctagtttggttcggttctcgatttttaattt 30554574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 46892648 - 46892701
Alignment:
Q  77 caaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacc 130  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  46892648 caaaccgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaacc 46892701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 779629 - 779533
Alignment:
Q  88 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 184  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||  |  ||||| || | ||||| ||||||||||||| ||||| || ||||| ||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggtttttaattt 779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 27524056 - 27524154
Alignment:
Q  72 aagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
    ||||||||||  ||||||||||||||  ||| | |||||||||||||||| |  ||||||| || ||| |||| ||| ||| || |||||||| |||||    
T  27524056 aagtccaaactaaaccaaaccgaaaaggtattcgaccttgtttggttcggatcaaaaccaaaccaaaccaatctaaatcgaccttgtttggttcggttc 27524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 44285605 - 44285691
Alignment:
Q  78 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 164  Q
    ||||||||  |||||||||||||||   ||||||||||||||||||  ||||| | |||||| || | ||| |||| ||||||||||    
T  44285605 aaaccgaattaaaccgaaaaaatatatgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggtt 44285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 212
Target Start/End: Original strand, 31111435 - 31111592
Alignment:
Q  55 aaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 154  Q
    |||| ||| ||||||| || ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||| ||||||||||    
T  31111435 aaaatcaacgaaaccgaaaatccaaattgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaactgatctgaaccaattgaaaccgatc 31111534  T
Q  155 tagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 212  Q
    ||||||||||||||||||| ||||| |||| ||||||  |||||||||| ||||||||    
T  31111535 tagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaatc 31111592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 4638207 - 4638340
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    ||||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||| | || ||| ||||||||||||||||||| ||||| ||||     
T  4638207 ccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcatttt 4638306  T
Q  186 gagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    |||||| |||||||||||||||||||||||||||    
T  4638307 gagatccgtgaaaccgatgaaccaatccgatgat 4638340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 13852433 - 13852276
Alignment:
Q  55 aaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 154  Q
    |||||||| |||| || |||||||||  ||| |||| | ||||||||||  || ||||||| |||||||||||||| |||| ||| |||| |||||||||    
T  13852433 aaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatccaaaccaatcaaaaccgatc 13852334  T
Q  155 tagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatc 212  Q
    ||||||||||||||||||  ||||| |||| |||||| ||||||||||||||||||||    
T  13852333 tagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatc 13852276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 29109348 - 29109190
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||||||| || | |||||  ||||||| | || ||||||||||||||||| |||||| ||||| |||||||||||||| |||  ||||| |    
T  29109348 taggggtgtaagtggttcggacaaaactgatgaaactgaaaatccaaaccgaaccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccga 29109249  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
     |||||  || | ||||| |||||||||||||||||||  | ||||| |||| ||||||    
T  29109248 accgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatc 29109190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 36009278 - 36009345
Alignment:
Q  152 atctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatgat 219  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||||||||| ||||||||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgat 36009345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 217
Target Start/End: Complemental strand, 3920019 - 3919857
Alignment:
Q  55 aaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 154  Q
    |||||||||||||||  || | ||||| ||| ||||||||||||  || | || |||||||||| ||||  ||||| | |||||| || | |||||||||    
T  3920019 aaaaccaatgaaacctaaaattcaaactgaatcaaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaactaaaccgatc 3919920  T
Q  155 tagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaatccgatg 217  Q
    |||||||||||||||| | |||||| |||| |||||||    |||||||||||| | ||||||    
T  3919919 tagtttggtttggttcttaatttttaattttgagatctaaagaaccgatgaaccgaaccgatg 3919857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 12894077 - 12893980
Alignment:
Q  55 aaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccga 152  Q
    |||||||| |||| |  |||||||||| |||||||||| ||||  ||||| ||||||||||||||||||  |||| || |||||| |||| |||||||    
T  12894077 aaaaccaacgaaatcaaaagtccaaactgaaccaaaccaaaaatgtatccgaccttgtttggttcggttcaaaacaaaaccgaaccaatctaaaccga 12893980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 37630375 - 37630461
Alignment:
Q  78 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 164  Q
    ||||||||||||||||||||| |||| ||||||| |||||| ||||  ||| | |||| ||| || | |||| ||||||||||||||    
T  37630375 aaaccgaaccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaacctaaactgatctagtttggtt 37630461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 38607020 - 38607141
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    |||||||||||| |||||| |||||||||| |||| ||  ||||| | |||||| |||| |||| || || |||||||| ||||| || ||||| ||||     
T  38607020 ccaaaccgaaaatatatccgaccttgtttg-ttcgattcaaaaccgaaccgaaccaatctaaactgaccttgtttggttcggttcttggtttttcatttt 38607118  T
Q  186 gagatctgtgaaaccgatgaacc 208  Q
    ||||||  | |||||||||||||    
T  38607119 gagatccataaaaccgatgaacc 38607141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 5526225 - 5526353
Alignment:
Q  41 taagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 140  Q
    ||||||||||| | |||||||| |||| || || ||||||   ||||||||||||||  ||||| ||||||||| ||||||||  ||||  |  |||||     
T  5526225 taagtggtccggacaaaaccaaagaaatcgaaaatccaaattaaaccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactga-acgaacc 5526323  T
Q  141 aatcgaaaccgatctagtttggtttggttc 170  Q
    || | ||||||||||||||||||| |||||    
T  5526324 aacctaaaccgatctagtttggttcggttc 5526353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 1970 - 1844
Alignment:
Q  93 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatct 192  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||| |||| |||| |||||| |||||||||||||||| ||||| ||||||||||      
T  1970 gaaaaaatatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattc 1871  T
Q  193 gtgaaaccgatgaaccaatccgatgat 219  Q
    |||||||||||||||||||||||||||    
T  1870 gtgaaaccgatgaaccaatccgatgat 1844  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 7176619 - 7176529
Alignment:
Q  79 aaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggtt 169  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||  ||| | | |||||| || | ||||||||||||||||||| ||||    
T  7176619 aaccgaaccaacccgaaaaagtatccaaccttgtttggtttggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggttcggtt 7176529  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 23301441 - 23301548
Alignment:
Q  63 tgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 162  Q
    |||||||| || | ||||| ||||||||||||||||  || | ||||||||||||||||||  ||||| | |||||| || | |||| ||||||||||||    
T  23301441 tgaaaccgaaaattcaaactgaaccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttgg 23301540  T
Q  163 tttggttc 170  Q
    || |||||    
T  23301541 ttcggttc 23301548  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 7551525 - 7551423
Alignment:
Q  88 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 187  Q
    ||||||||||  |||||||| ||||||||||||| |  ||||||| |||||| |||| ||||||   | |||||| | ||||| |||||||| |||||||    
T  7551525 aaaccgaaaaggtatccaacattgtttggttcggatcaaaaccaaaccgaaccaatctaaaccggctttgtttgggtcggttcttgatttttcatttcga 7551426  T
Q  188 gat 190  Q
    |||    
T  7551425 gat 7551423  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 191
Target Start/End: Original strand, 23300455 - 23300583
Alignment:
Q  63 tgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 162  Q
    |||||||| || | ||||||||||||||||||||||  |  | ||||||||||||||||||  ||||  | |||||| || | |||| |||||||||| |    
T  23300455 tgaaaccgaaaattcaaaccgaaccaaaccgaaaaagaaatcgaccttgtttggttcggttcaaaactgaaccgaaccaacctaaactgatctagtttag 23300554  T
Q  163 tttggttcatgattttttatttcgagatc 191  Q
    || |||||  | ||||| |||| ||||||    
T  23300555 ttcggttctcggtttttaattttgagatc 23300583  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 11971476 - 11971546
Alignment:
Q  53 ataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 123  Q
    ||||||||||||||| || ||  | ||||||||| ||||||||||  ||||| | ||||||||||||||||    
T  11971476 ataaaaccaatgaaatcgaaaacctaaaccgaactaaaccgaaaatgtatccgatcttgtttggttcggtt 11971546  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 23585913 - 23585990
Alignment:
Q  93 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
    |||||| ||||| ||||||||| ||||||||  ||||| | || ||||||   |||||||| ||||||||||||||||    
T  23585913 gaaaaagtatccgaccttgttttgttcggttcaaaaccgaaccaaactaacgtaaaccgatatagtttggtttggttc 23585990  T

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Target: scaffold0070 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 33729 - 33819
Alignment:
Q  33 taggggtttaagtggtccgaataaaaccaatgaaaccggaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 123  Q
    ||||||| |||||||| || |||||||||||||||| | |||||||||  |||||||||||||||  ||||  ||||||| ||||| ||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaattgaaccaaaccgaaaatgtatctgaccttgtctggtttggtt 33819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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