View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_311 (Length: 230)
Name: NF11309A_low_311
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_311 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 11780431 - 11780271
Alignment:
| Q |
37 |
ggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaat |
136 |
Q |
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| T |
11780431 |
ggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtgaggagctgctactagctacgccagtgtttgaaat |
11780332 |
T |
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| Q |
137 |
tgttt-cccggttgcatgatgaagtgcattctgagggagtggagcagtcgcatccgacatc |
196 |
Q |
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| T |
11780331 |
tgtttccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatc |
11780271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 17158845 - 17158691
Alignment:
| Q |
42 |
tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt |
141 |
Q |
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| T |
17158845 |
tcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgttt |
17158746 |
T |
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| Q |
142 |
cccggtt---gcatgatgaagtgcattctgagggagt-ggagcagtcgcatccga |
192 |
Q |
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| T |
17158745 |
cctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccga |
17158691 |
T |
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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 12101765 - 12101867
Alignment:
| Q |
42 |
tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt |
141 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | || ||| || | ||||||||||||| ||| |
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| T |
12101765 |
tcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagtgtttgaaattattt |
12101864 |
T |
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| Q |
142 |
ccc |
144 |
Q |
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||| |
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| T |
12101865 |
ccc |
12101867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 14977507 - 14977661
Alignment:
| Q |
45 |
ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc |
144 |
Q |
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||||| ||||||||||| ||||| ||| | || ||| ||||||| | |||||||||||| || ||| | |||||| |||||| |||| |||| |||| |
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| T |
14977507 |
ttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaagttgccagaagctacaccagtgattgagtttgtgtccc |
14977606 |
T |
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| Q |
145 |
g-gttgc--atgatgaagtgcattctgagggagtggagcagtcgcatccgacatc |
196 |
Q |
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| T |
14977607 |
cagttgcgcacgatgacgtgcattccgagagagtggagcagtcgcatccgacatc |
14977661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 19069709 - 19069555
Alignment:
| Q |
45 |
ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt-cc |
143 |
Q |
| |
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|||||||||| ||||||||||||||| | || || | ||||||||| |||||| | ||||||||| || |||||||||||||| || || ||| || |
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| T |
19069709 |
ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc |
19069610 |
T |
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| Q |
144 |
cggtt--gcatgatgaagtgcattctgagggagtggagcagtcgcatccgacatc |
196 |
Q |
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| T |
19069609 |
ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatc |
19069555 |
T |
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