View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_313 (Length: 230)
Name: NF11309A_low_313
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_313 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 46238871 - 46239100
Alignment:
| Q |
1 |
agggaagaaaccatattctacagaggtggggttcaaacccttgcgtctgacttagttccagatgcttggaaagtaggtgttattaggcaacttgtgtgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46238871 |
agggaagaaaccatattctacagaggtggggttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaacttgtttgta |
46238970 |
T |
|
| Q |
101 |
gctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacactgcagatgagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46238971 |
gctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagat |
46239070 |
T |
|
| Q |
201 |
tgccatctatgctgtgggtgaaggaattga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46239071 |
tgccatctatgctgtgggtgaaggaattga |
46239100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3455787 - 3455557
Alignment:
| Q |
1 |
agggaagaaaccatattctacagaggtgggg-ttcaaacccttgcgtctgacttagttccagatgcttggaaagtaggtgttattaggcaacttgtgtgt |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3455787 |
agggaagaaaccgtattctacagaggtgggggttaaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaacttgtgtgt |
3455688 |
T |
|
| Q |
100 |
agctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacactgcagatgaga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
3455687 |
agctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacagcattgcagatgaga |
3455588 |
T |
|
| Q |
200 |
ttgccatctatgctgtgggtgaaggaattga |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3455587 |
ttgccatctatgctgtgggtgaaggaattga |
3455557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University