View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_319 (Length: 229)
Name: NF11309A_low_319
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_319 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5195636 - 5195424
Alignment:
| Q |
1 |
taatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctga |
100 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||||| | ||| ||||||||||||| |
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| T |
5195636 |
taatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactctga |
5195537 |
T |
|
| Q |
101 |
ggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaat |
200 |
Q |
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|||||||||||||||||||||| || |||||||||||| ||||||||| |||||||| ||||||||||||||| |||| ||| ||||||||||||| || |
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| T |
5195536 |
ggtttgttaagttgcttaaacaatctggaagtttagcactaaacatgtttttgctgatatccagttctaccaaatccttaaaattgcatagtcctgtcat |
5195437 |
T |
|
| Q |
201 |
aattaactatgtc |
213 |
Q |
| |
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||||||||||||| |
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| T |
5195436 |
aattaactatgtc |
5195424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 4842630 - 4842827
Alignment:
| Q |
16 |
gataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgc |
115 |
Q |
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|||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||| | |
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| T |
4842630 |
gataagaatgtcaaggatgtgagattggtagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttac |
4842729 |
T |
|
| Q |
116 |
ttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaataattaactatgtc |
213 |
Q |
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| T |
4842730 |
ttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttcttccaaatccttcaaattgcatagtcctgtcataattaactatgtc |
4842827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5159994 - 5159789
Alignment:
| Q |
1 |
taatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||| || |||| |||||||| |||||| ||||||||||||| | ||| ||||||||||||| |
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|
| T |
5159994 |
taatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaactttccactgaacagattattactaagttcaagaactctga |
5159895 |
T |
|
| Q |
101 |
ggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||| ||||||||||||||| |||||||| ||||||||||||| || |
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| T |
5159894 |
ggtttgttaagttgcttaaacactcaggaaatttagcactaaacatgttctggctgatatccagttctaccaaatccttcaaattgcatagtcctgtcat |
5159795 |
T |
|
| Q |
201 |
aattaa |
206 |
Q |
| |
|
|||||| |
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|
| T |
5159794 |
aattaa |
5159789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5182242 - 5182037
Alignment:
| Q |
1 |
taatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||||| | ||| ||||||||||| | |
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|
| T |
5182242 |
taatttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactctaa |
5182143 |
T |
|
| Q |
101 |
ggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaat |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |||| |||||||||| |||||||| ||||||||||||| || |
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|
| T |
5182142 |
ggtttgttaagttgcttaaacactctggaagtttagcactaaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcctgtcat |
5182043 |
T |
|
| Q |
201 |
aattaa |
206 |
Q |
| |
|
|||||| |
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|
| T |
5182042 |
aattaa |
5182037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 5172895 - 5172698
Alignment:
| Q |
16 |
gataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgc |
115 |
Q |
| |
|
|||||| ||| || |||||||||||| || |||||||||||||||||||| |||| ||||||| || ||||||||||| |||||||||||||||||| | |
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|
| T |
5172895 |
gataagaatgtcaaggatgtgagattactaatgaaggatggaaaatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttac |
5172796 |
T |
|
| Q |
116 |
ttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaataattaactatgtc |
213 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
5172795 |
ttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataattaactatgtc |
5172698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 5213802 - 5213606
Alignment:
| Q |
1 |
taatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| ||||| || ||| |||||||| | | |
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|
| T |
5213802 |
taatttccaaagagggataagtatgccagtgatgtgagattactaatgaaggatggaaaatttccactgaacaaattatagctaagttcaagaacattca |
5213703 |
T |
|
| Q |
101 |
ggtttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgt |
197 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||||||||||| |||||| || || ||||||||| ||||||| ||||||||||||| |
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|
| T |
5213702 |
ggtttgttaagttgcttaaacactcgggaagttgcgcgctaaacatgttatagctgatatctagctctaccaaatccttcaatttgcatagtcctgt |
5213606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4857089 - 4857151
Alignment:
| Q |
1 |
taatttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttc |
64 |
Q |
| |
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||||||||| ||| ||||| |||||| || |||||||||||||||||||||||||||||||||| |
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| T |
4857089 |
taatttccatagatggata-gtatgcaagagatgtgagattggtagtgaaggatggaaaatttc |
4857151 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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