View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_322 (Length: 229)
Name: NF11309A_low_322
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_322 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 39827724 - 39827945
Alignment:
| Q |
3 |
tttatttatcataaaacaaagtaaaaattgtattgaaatatagacgatatgatattaatccaacgactaaagtaccgaataagtgaccgtaaacgctagt |
102 |
Q |
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| T |
39827724 |
tttatttatcataaaacaaagtaaaaattgtattgaaatatagacgatatgatattaatccaacgactaaagtaccgaataagtgactgtaaacgctagt |
39827823 |
T |
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| Q |
103 |
gagcattgacaattgttcaaggtcatctcttggcatcacagtggggaccgtggattcctcgacatctttcatgtgtccatgcacgtatttatttcctttt |
202 |
Q |
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| T |
39827824 |
gagtattgacaattgtgcaaggtcatctcttggcatcacagtggggaccgtggattcctcgacatctttcatgtgtccatgcacgtatttatttcctttt |
39827923 |
T |
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| Q |
203 |
catctttcactctgtcattcat |
224 |
Q |
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| T |
39827924 |
catctttcactctgtcattcat |
39827945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 44037859 - 44037823
Alignment:
| Q |
130 |
tcttggcatcacagtggggaccgtggattcctcgaca |
166 |
Q |
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| T |
44037859 |
tcttggcatcacagtggggactatggattcctcgaca |
44037823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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