View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_324 (Length: 228)
Name: NF11309A_low_324
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_324 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 45002664 - 45002891
Alignment:
| Q |
1 |
gtttcatagtgtgttgattgtcttagattatgtttagaacaagtaaacattctcttgacctaaaatgatgctaataatgaattcgaaatactttttgggc |
100 |
Q |
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| T |
45002664 |
gtttcatagtgtgttgattgtcttagattatgtttagaacaagtaaacattctcttgacctaaaatgatgctaacaatgaattcgaaatactttttgggc |
45002763 |
T |
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| Q |
101 |
agatggaattggaacaaacttttttctttcttttaggtgctgaaatgtagaaaaatggccacaatagtggatttgatgcatgccaaggtcagaattgtgt |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45002764 |
tgatggaattggaacaaatttttttctttcttttaggtgctgaaatgtagaaaaatggccacaatagtggatttgatgcatgccaaggtctgaattgtgt |
45002863 |
T |
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| Q |
201 |
caaaatggtttgaaaaatctctagcact |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45002864 |
caaaatggtttgaaaaatctctagcact |
45002891 |
T |
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