View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_328 (Length: 227)
Name: NF11309A_low_328
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_328 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20816615 - 20816837
Alignment:
| Q |
1 |
tgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816615 |
tgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatct |
20816714 |
T |
|
| Q |
101 |
aatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816715 |
aatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgcg |
20816814 |
T |
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| Q |
201 |
ctttggaagtgttgaattacttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
20816815 |
ctttggaagtgttgaattacttg |
20816837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38779530 - 38779308
Alignment:
| Q |
1 |
tgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatct |
100 |
Q |
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|||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779530 |
tgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatct |
38779431 |
T |
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| Q |
101 |
aatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcg |
200 |
Q |
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| T |
38779430 |
aatcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcgtg |
38779331 |
T |
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| Q |
201 |
ctttggaagtgttgaattacttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38779330 |
ctttggaagtgttgaattacttg |
38779308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 33388485 - 33388268
Alignment:
| Q |
5 |
ggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
104 |
Q |
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|||||||| ||||| |||||||||| |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388485 |
ggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
33388386 |
T |
|
| Q |
105 |
tcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgcttt |
204 |
Q |
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| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||| |
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| T |
33388385 |
ttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcgtgcttt |
33388286 |
T |
|
| Q |
205 |
ggaagtgttgaattactt |
222 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
33388285 |
ggaagtgttgaattactt |
33388268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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