View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_33 (Length: 421)
Name: NF11309A_low_33
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 30744661 - 30745001
Alignment:
| Q |
17 |
gaaaatagcgaaaacaacgtgagaaaagtgacttgtagaactttaaaatagagaaaatatcaagaaaagaaaaattcacgagtttttaaaacatatgtaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30744661 |
gaaaatagcgaaaacaacgtgagaaaagtgacttgtagaactttcaaaaagagaaaatatcaagaaaagaaaaattcacgagttgttaaaacatatgtaa |
30744760 |
T |
|
| Q |
117 |
tcttttaatttgattattcttaaaaatgtgctaaaacatatttaagtcagttaataaaacatgtgacataaaacatgtttgagataaattttaaagaagt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
30744761 |
tcttttaatttgattattcttaaaaatgtgctaaaacatatttaagtcagttaataaaacatgtgacataaaacatgtttgagatgagttttaaagaagt |
30744860 |
T |
|
| Q |
217 |
aatctctatttaaaatgtagtgttttgtacataagtcatagttctaaaataccaaaattgttgtgttggatacggtggccgaggtttgaaccagactcct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
30744861 |
aatctctatttaaaatgtagtgttttgtacataagtcacagttgtaaaat-----aattgttgtgttggatatggtggccgagatttgaaccagactcct |
30744955 |
T |
|
| Q |
317 |
ccatttatgtgagtttccaataattcttgttatttcgtttatcaat |
362 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
30744956 |
atatttatgtgagttttcaatagttcttgttattttgtttatcaat |
30745001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 184 - 362
Target Start/End: Complemental strand, 30728446 - 30728268
Alignment:
| Q |
184 |
ataaaacatgtttgagataaattttaaagaagtaatctctatttaaaatgtagtgttttgtacataagtcatagttctaaaataccaaaattgttgtgtt |
283 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
30728446 |
ataaaacatgtttgagatgagttttaaagaagtaatctctatttaaaatgtagtgttttgtacataagtcatagttctaaaatactaaaattgttatgtt |
30728347 |
T |
|
| Q |
284 |
ggatacggtggccgaggtttgaaccagactcctccatttatgtgagtttccaataattcttgttatttcgtttatcaat |
362 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
30728346 |
ggatatggtggtcgaggtttgaactagactcctccatttacgtgagttttcaatagttcttgttatttcgtttatcaat |
30728268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 30733112 - 30732992
Alignment:
| Q |
44 |
gtgacttgtagaactttaaaatagagaaaatatcaagaaaagaaaaattcacgagtttttaaaacatatgtaatcttttaatttgattattcttaaaaat |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
30733112 |
gtgacttgtagaactttaaaatagagaaaatatcaagaaaagaaaaattcacgagtttttaaaacatatgtaatcttttgatttgattattctttaaaat |
30733013 |
T |
|
| Q |
144 |
gtgctaaaacatatttaagtc |
164 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30733012 |
gtgctaaaacatatttaagtc |
30732992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 30698016 - 30697977
Alignment:
| Q |
17 |
gaaaatagcgaaaacaacgtgagaaaagtgacttgtagaa |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30698016 |
gaaaatagcgaaaacaacgtgagaaaagtggcttgtagaa |
30697977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 30733287 - 30733248
Alignment:
| Q |
17 |
gaaaatagcgaaaacaacgtgagaaaagtgacttgtagaa |
56 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
30733287 |
gaaaatagtgaaaacaacgtgagaaaagtggcttgtagaa |
30733248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University