View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_331 (Length: 226)
Name: NF11309A_low_331
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_331 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 45003114 - 45002891
Alignment:
| Q |
3 |
tatctaacttatcaacattaacctaattaacataaggttgactagaaacttaatggacttttaataccaacctatacattctctctatgcttacaagtta |
102 |
Q |
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| T |
45003114 |
tatctaacttatcaacattaacctaattaacataaggttgactagaaacttaatggacttttaataccaacctatacattctctctatccttacaagtta |
45003015 |
T |
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| Q |
103 |
gaagagataagataatgatgatgataataagagttagaatttatttgggaccattgaaaccatgacgggtcatccaaattaggcagcccagacccttgca |
202 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45003014 |
gaagagctaagataatgatgatgataataagagttagaatttatttgggaccattgaaaccatgacgggtcgtccaaattaggcagcccagacccttgca |
45002915 |
T |
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| Q |
203 |
tcgaagccagtgtcctggacatca |
226 |
Q |
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||||||||| |||||||||||||| |
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| T |
45002914 |
tcgaagccaatgtcctggacatca |
45002891 |
T |
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