View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_335 (Length: 226)
Name: NF11309A_low_335
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_335 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 45945928 - 45945713
Alignment:
| Q |
7 |
gcaatcaccaccaccgccgtcaatgctaccgttgagaaaccaaaactcgacggtggtaaaggccgtgcctttgtgactttccttgctggaaacgctgatt |
106 |
Q |
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| T |
45945928 |
gcaatcaccaccaccgccgtgaatgctaccgttgagaaaccaaaactcgacggtggtaaaggccgtgcctttgtgactttccttgctggaaacgctgatt |
45945829 |
T |
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| Q |
107 |
acatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgctatcttacctgatgttcccgtagaacatcg |
206 |
Q |
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| T |
45945828 |
acatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgctatcttacctgatgttcctgaagaacatcg |
45945729 |
T |
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| Q |
207 |
taagttccttgtttca |
222 |
Q |
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|||| ||||||||||| |
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| T |
45945728 |
taagatccttgtttca |
45945713 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 55221333 - 55221397
Alignment:
| Q |
73 |
gcctttgtgactttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaagg |
137 |
Q |
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| T |
55221333 |
gcctttgtgaccttccttgttggaaatggtgactatgtcaaaggtgtggttggtttagccaaagg |
55221397 |
T |
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