View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_336 (Length: 226)
Name: NF11309A_low_336
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_336 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 70 - 220
Target Start/End: Original strand, 6663077 - 6663227
Alignment:
| Q |
70 |
cccataaacaattttcacttactccgccacactcacaacagtaacaccctcaagaacacctctaacaccaagcacctcagaatttgaaaaattctcagaa |
169 |
Q |
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| T |
6663077 |
cccataaacaattctcacttactccgccacactcgcaacagtaacaccctcaagaacacctctaacaccaagcacctcagaatttgaaaaattctcagaa |
6663176 |
T |
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| Q |
170 |
ccaacaataacacaatcatcatcagcatcaccatcaatctcaccctcctcc |
220 |
Q |
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| T |
6663177 |
ccaacaataacacaatcatcatcagcatcaccatcaatctcaccctcctcc |
6663227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6663024 - 6663061
Alignment:
| Q |
1 |
aaaaacacaagtcaattcaaagttgcaaatttgcaacg |
38 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6663024 |
aaaaacacaagtcaattcaaagttgcaaatttgcaacg |
6663061 |
T |
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