View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_34 (Length: 419)
Name: NF11309A_low_34
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 27915288 - 27915071
Alignment:
| Q |
7 |
ctaaaattattaagaaaaatctgagtactagtatatgtcggtaactggttttgtggtttatggggcactttgtcagtgttcccacaatattgtaagatcg |
106 |
Q |
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| T |
27915288 |
ctaaaattattaagaaaaatctgagtactaacatatgtcggtaaatggtt--gtggttcatggtgcactttgtcagtgttcccacaatattgtaagatcg |
27915191 |
T |
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| Q |
107 |
agaaaaatggcaaccagaaggaaaataatgattgataaattatgagtgaatagaaatgtatgtcaactccagcccctatatagctaaccattttattgaa |
206 |
Q |
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| T |
27915190 |
aggaaaatggcaaccagaaggaaaataatgattgataaattatgagtgaatagaaatgtatgtcaattccggcccctatatagttaaccgttttattgaa |
27915091 |
T |
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| Q |
207 |
ttatacagtatatgttacta |
226 |
Q |
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| T |
27915090 |
ttataaaatatatgttacta |
27915071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 241 - 400
Target Start/End: Complemental strand, 27914817 - 27914658
Alignment:
| Q |
241 |
aaacacactttcattgtctgtttattgagtaggggtcggaggacaagaacatacgtattacgtacttaaataattaatacattggtcatggatacttgca |
340 |
Q |
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| T |
27914817 |
aaacacacttttattgtctgtttagagagtaggggtctgaggacaagaacatacgtattacgtacttaaataattaatacattggtcatggaaacttgca |
27914718 |
T |
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| Q |
341 |
tgaaagagtacttgattggccacttgcagatatatatactagattcttcgcacgatccag |
400 |
Q |
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| T |
27914717 |
agaaagagtacgtgattggctacttgcagatatatatactagattcttcgcacgatccag |
27914658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 27909857 - 27909681
Alignment:
| Q |
52 |
tggttttgtggtttatggggcactttgtcagtgttcccacaatattgtaagatcgagaaaaatggcaaccagaaggaaaataatgattgataaattatga |
151 |
Q |
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| T |
27909857 |
tggttttgtggttcatgatgcactttgtctgtgttcccacgatattgtaagatcaaggaaaatggcaatcagaagggatataatgattgataaattatga |
27909758 |
T |
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| Q |
152 |
gtgaatagaaatgtatgtcaactccagcccctatatagctaaccattttattgaattatacagtatatgttactagt |
228 |
Q |
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| T |
27909757 |
gtgaatagaaatgtatgtcaattccggcccctatatagttaaccattttattgaattataaaatatatgttactagt |
27909681 |
T |
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