View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_342 (Length: 222)

Name: NF11309A_low_342
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_342
NF11309A_low_342
[»] chr1 (4 HSPs)
chr1 (6-202)||(7386417-7386613)
chr1 (52-179)||(19991215-19991342)
chr1 (96-180)||(19322649-19322733)
chr1 (6-37)||(19322751-19322782)
[»] chr5 (4 HSPs)
chr5 (67-203)||(4925268-4925404)
chr5 (53-203)||(35205797-35205947)
chr5 (62-203)||(35211203-35211344)
chr5 (6-42)||(4925202-4925238)
[»] chr3 (3 HSPs)
chr3 (53-201)||(52314503-52314651)
chr3 (53-199)||(53464913-53465059)
chr3 (78-175)||(1995809-1995906)
[»] chr2 (2 HSPs)
chr2 (108-204)||(39375508-39375604)
chr2 (6-46)||(39375630-39375670)
[»] chr4 (2 HSPs)
chr4 (48-202)||(23563560-23563714)
chr4 (74-202)||(48265287-48265415)
[»] chr8 (1 HSPs)
chr8 (87-204)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (80-201)||(45888823-45888944)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 7386417 - 7386613
Alignment:
Q  6 tatactattaattaaaagaaataaaactcaaagtattacaagatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaac 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  7386417 tatactattaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaac 7386516  T
Q  106 tactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 202  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  7386517 tactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctcttag 7386613  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 19991342 - 19991215
Alignment:
Q  52 aacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagc 151  Q
    ||||||| | |||||||||| |||||||| ||||  ||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | |||    
T  19991342 aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagc 19991243  T
Q  152 attggttagtgtgataccacccatatgg 179  Q
    |||||  |||||||||||||||||||||    
T  19991242 attgggcagtgtgataccacccatatgg 19991215  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
Q  96 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga 180  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| | ||||||| ||| ||||||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 19322782 - 19322751
Alignment:
Q  6 tatactattaattaaaagaaataaaactcaaa 37  Q
    ||||||||||||||||||||||||||||||||    
T  19322782 tatactattaattaaaagaaataaaactcaaa 19322751  T

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Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 4925268 - 4925404
Alignment:
Q  67 aggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgat 166  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  4925268 aggaacgtagtaatgcattgttaccatgtatagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgat 4925367  T
Q  167 accacccatatggacagacgatgtgtatgctcttagt 203  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4925368 accacccatatggacagacgatgcgtatgctcttagt 4925404  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 35205797 - 35205947
Alignment:
Q  53 acaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagca 152  Q
    |||||| | |||||||||| | ||||||||||| || ||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | ||||    
T  35205797 acaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagca 35205896  T
Q  153 ttggttagtgtgataccacccatatggacagacgatgtgtatgctcttagt 203  Q
    |||| || ||||||||||||||||||  ||| ||||||| |||||||||||    
T  35205897 ttgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctcttagt 35205947  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 62 - 203
Target Start/End: Complemental strand, 35211344 - 35211203
Alignment:
Q  62 ggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt 161  Q
    |||||||||| | ||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | |||||||| || |    
T  35211344 ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat 35211245  T
Q  162 gtgataccacccatatggacagacgatgtgtatgctcttagt 203  Q
    |||||||||||||||||  |||  |||||| |||||||||||    
T  35211244 gtgataccacccatatgtgcaggtgatgtgcatgctcttagt 35211203  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 4925202 - 4925238
Alignment:
Q  6 tatactattaattaaaagaaataaaactcaaagtatt 42  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4925202 tatactattaattaaaagaaataatactcaaagtatt 4925238  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 52314503 - 52314651
Alignment:
Q  53 acaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagca 152  Q
    |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||||| | ||||    
T  52314503 acaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatgacacaaaagca 52314602  T
Q  153 ttggttagtgtgataccacccatatggacagacgatgtgtatgctctta 201  Q
    ||||  | ||||||||||||||||||  ||| ||||||| |||||||||    
T  52314603 ttgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctctta 52314651  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 53464913 - 53465059
Alignment:
Q  53 acaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagca 152  Q
    |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||||| | ||||    
T  53464913 acaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatgacacaaaagca 53465012  T
Q  153 ttggttagtgtgataccacccatatggacagacgatgtgtatgctct 199  Q
    ||||  | ||||||||||||||||||  ||| ||||||| |||||||    
T  53465013 ttgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 53465059  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 1995809 - 1995906
Alignment:
Q  78 aatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccat 175  Q
    ||||||||||||| |||  | ||||| |||||||  ||||| |||||||||| | ||||||||||| | || ||||| || |||||  ||||||||||    
T  1995809 aatgcattgctactatggttggtttagctactcatatccaatgccaattatccaagatattatgactcaagtgcattagtcagtgtattaccacccat 1995906  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 39375604 - 39375508
Alignment:
Q  108 ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagtg 204  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctcttagtg 39375508  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 39375670 - 39375630
Alignment:
Q  6 tatactattaattaaaagaaataaaactcaaagtattacaa 46  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  39375670 tatattattaattaaaagaaataaaacttaaagtattacaa 39375630  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 23563560 - 23563714
Alignment:
Q  48 atctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacga 147  Q
    |||| |||||| | |||||||||| ||||||||||||| | |||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| |    
T  23563560 atctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacacaa 23563659  T
Q  148 gagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 202  Q
     ||||||||  |||||||||||||||||||   ||| ||||||| ||||||||||    
T  23563660 aagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctcttag 23563714  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 48265287 - 48265415
Alignment:
Q  74 tagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc 173  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | ||||||||  |||||||||||||||    
T  48265287 tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc 48265386  T
Q  174 atatggacagacgatgtgtatgctcttag 202  Q
    |||||  ||| ||||||| ||| ||||||    
T  48265387 atatgtgcaggcgatgtgcatgttcttag 48265415  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 40278604 - 40278487
Alignment:
Q  87 ctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg 186  Q
    |||||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | ||||||||  ||||||||||||||||||||  ||| ||    
T  40278604 ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg 40278505  T
Q  187 atgtgtatgctcttagtg 204  Q
    ||||||||||||| ||||    
T  40278504 atgtgtatgctctaagtg 40278487  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 45888823 - 45888944
Alignment:
Q  80 tgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgg 179  Q
    |||||||| || ||| ||| |||| |||||||  ||||| |||||||||| | | || |||||||| | ||||||||||| |||  ||||||| || | |    
T  45888823 tgcattgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttg 45888922  T
Q  180 acagacgatgtgtatgctctta 201  Q
    || |||||||||||||||||||    
T  45888923 accgacgatgtgtatgctctta 45888944  T

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