View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_344 (Length: 220)
Name: NF11309A_low_344
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_344 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 11343424 - 11343634
Alignment:
| Q |
10 |
atagtaagaataaacaataatttaacaacttcgaagcttcaatttcatagatttttgcatctcatctctttcatacttaatttgttatcaaaattaataa |
109 |
Q |
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| T |
11343424 |
atagtaagaataaacaataatttaacaacttagaagcttcaatttcatagatttttgcatctcatctctttcatacttaatttgttatcaaaattaataa |
11343523 |
T |
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| Q |
110 |
ttttaagactcaactccgattgttaaaactcaacaacattctataatttgagagaaggaattatggaagagagaaggaaaggacaaggcaataatttgag |
209 |
Q |
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| T |
11343524 |
ttttaagactcaactccgattgttaaaactcaacatcattctataatttgagagaaggaattatggaagagagaaggaaaggacaagccaataatttgag |
11343623 |
T |
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| Q |
210 |
agatattataa |
220 |
Q |
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| T |
11343624 |
agatattataa |
11343634 |
T |
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Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 38677296 - 38677502
Alignment:
| Q |
14 |
taagaataaacaataatttaacaacttcgaagcttcaatttcatagatttttgcatctcatctctttcatacttaatttgttatcaaaattaataatttt |
113 |
Q |
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|||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38677296 |
taagaataaataataatttaacaatttagaagcttcaatttcatagatttttgcatctcatctctttcatacttaatttgttatcaaaattaataatttt |
38677395 |
T |
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| Q |
114 |
aagactcaactccgattgttaaaactcaacaacattctataatttgagagaaggaattatggaagagagaaggaaaggacaaggcaataatttgagagat |
213 |
Q |
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| T |
38677396 |
aagactcaactccgattgttaaaactcaacaacattctataatttgagagaaggaattatggaagagagaaggaaaggacaagccaataatttgagagat |
38677495 |
T |
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| Q |
214 |
attataa |
220 |
Q |
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| T |
38677496 |
attataa |
38677502 |
T |
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