View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_359 (Length: 214)
Name: NF11309A_low_359
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_359 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 7128353 - 7128164
Alignment:
| Q |
17 |
atttagaaattcaagcatgatata---gacatatctagcacttaaattcaaccaacacccatccttgatcaatcacaacatcaaaattcacccaacatcc |
113 |
Q |
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| T |
7128353 |
atttagaaattcaagcatgatataatagacatatctagcacttaaattcaaccaacacccatccttgatcaatcacaacatcaaaattcacccaacat-c |
7128255 |
T |
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| Q |
114 |
cattcttgctcaagcacaacaccaagaatgcatctcaacccaccttgatgcaggagtgaaaacatcttctttcaaaggcagcaataaatacaac |
207 |
Q |
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| T |
7128254 |
cattcttgctcaagcacaacaccaataatgcatctcaacccaccttgat---gaagtgaaaacatcttctttcaaaggcagcaataaatacaac |
7128164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 7133585 - 7133490
Alignment:
| Q |
112 |
cccattcttgctcaagcacaacaccaagaatgcatctcaa-------cccaccttgatgcaggagtgaaaacatcttctttcaaaggcagcaataaatac |
204 |
Q |
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| T |
7133585 |
cccattcttgctcaagcacaaca---agaatgcatctcaattctcaacccaccttgat-catg--tgaaaacatcttctgtcaaaggcagcagtaaatac |
7133492 |
T |
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