View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_36 (Length: 415)

Name: NF11309A_low_36
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_36
NF11309A_low_36
[»] chr4 (23 HSPs)
chr4 (113-328)||(26251583-26251798)
chr4 (75-170)||(40361217-40361312)
chr4 (60-167)||(26251404-26251511)
chr4 (60-141)||(34981453-34981534)
chr4 (99-188)||(40361739-40361828)
chr4 (344-395)||(26196626-26196677)
chr4 (99-181)||(4674943-4675025)
chr4 (60-121)||(34981937-34981998)
chr4 (99-189)||(43501714-43501804)
chr4 (113-187)||(49285998-49286072)
chr4 (99-188)||(36046041-36046130)
chr4 (107-171)||(40277161-40277225)
chr4 (129-188)||(26973306-26973365)
chr4 (96-187)||(31825837-31825928)
chr4 (99-190)||(33983753-33983844)
chr4 (110-188)||(20394174-20394252)
chr4 (98-171)||(42704355-42704428)
chr4 (104-189)||(54185084-54185169)
chr4 (131-187)||(26973958-26974014)
chr4 (99-186)||(156038-156125)
chr4 (99-166)||(53259741-53259808)
chr4 (109-171)||(39834031-39834093)
chr4 (99-188)||(51721513-51721601)
[»] chr6 (9 HSPs)
chr6 (60-186)||(1860283-1860409)
chr6 (99-188)||(5741514-5741603)
chr6 (60-169)||(30746524-30746633)
chr6 (60-141)||(31778779-31778860)
chr6 (99-189)||(5741176-5741266)
chr6 (99-187)||(11599968-11600056)
chr6 (144-193)||(4362469-4362518)
chr6 (68-113)||(31779505-31779550)
chr6 (131-187)||(30633434-30633490)
[»] scaffold0007 (3 HSPs)
scaffold0007 (61-169)||(187419-187527)
scaffold0007 (60-168)||(186871-186979)
scaffold0007 (98-187)||(256391-256480)
[»] chr2 (18 HSPs)
chr2 (60-187)||(42882455-42882581)
chr2 (60-141)||(19004758-19004839)
chr2 (60-181)||(38571566-38571687)
chr2 (99-186)||(42808651-42808737)
chr2 (63-141)||(19004930-19005008)
chr2 (73-122)||(44158267-44158316)
chr2 (61-141)||(35049501-35049581)
chr2 (70-181)||(745760-745871)
chr2 (60-136)||(33710848-33710925)
chr2 (110-187)||(36074176-36074253)
chr2 (99-191)||(5289764-5289856)
chr2 (99-187)||(6729666-6729753)
chr2 (115-187)||(34618922-34618994)
chr2 (99-171)||(42807387-42807459)
chr2 (99-158)||(6402420-6402479)
chr2 (107-186)||(12874378-12874457)
chr2 (139-188)||(3815721-3815770)
chr2 (143-188)||(9826693-9826738)
[»] chr5 (15 HSPs)
chr5 (75-188)||(7634041-7634154)
chr5 (99-181)||(25868017-25868099)
chr5 (60-181)||(29303589-29303710)
chr5 (99-167)||(16060807-16060875)
chr5 (99-187)||(34954921-34955009)
chr5 (109-180)||(6408552-6408623)
chr5 (107-193)||(21102294-21102380)
chr5 (99-188)||(7633431-7633520)
chr5 (107-171)||(43275531-43275595)
chr5 (99-158)||(26092496-26092555)
chr5 (107-188)||(1080864-1080945)
chr5 (126-167)||(9942741-9942782)
chr5 (107-188)||(43276122-43276203)
chr5 (99-155)||(14410829-14410885)
chr5 (151-187)||(28784933-28784969)
[»] chr3 (16 HSPs)
chr3 (100-191)||(36754184-36754275)
chr3 (99-181)||(4041097-4041179)
chr3 (99-180)||(4040836-4040917)
chr3 (99-189)||(25226738-25226828)
chr3 (108-186)||(45004492-45004569)
chr3 (98-189)||(6778686-6778777)
chr3 (60-141)||(53038839-53038918)
chr3 (61-142)||(39708287-39708368)
chr3 (107-188)||(46637090-46637171)
chr3 (113-188)||(39417919-39417994)
chr3 (98-169)||(53630327-53630398)
chr3 (99-169)||(7789968-7790038)
chr3 (151-193)||(46636562-46636604)
chr3 (107-187)||(25227358-25227438)
chr3 (99-187)||(41650945-41651033)
chr3 (99-151)||(52562779-52562831)
[»] chr1 (17 HSPs)
chr1 (99-187)||(11435308-11435396)
chr1 (60-158)||(44527896-44527994)
chr1 (131-187)||(3757422-3757478)
chr1 (70-121)||(24313802-24313853)
chr1 (113-191)||(43514892-43514970)
chr1 (99-155)||(11434683-11434739)
chr1 (99-190)||(43137572-43137663)
chr1 (98-188)||(28539435-28539524)
chr1 (99-188)||(28485812-28485901)
chr1 (99-187)||(7013746-7013834)
chr1 (115-187)||(43194268-43194340)
chr1 (99-187)||(46090135-46090223)
chr1 (96-188)||(48569383-48569475)
chr1 (99-166)||(37919634-37919701)
chr1 (99-188)||(10309554-10309643)
chr1 (109-158)||(45886893-45886942)
chr1 (141-189)||(28486441-28486489)
[»] chr8 (11 HSPs)
chr8 (99-181)||(7130679-7130761)
chr8 (110-187)||(45155920-45155997)
chr8 (126-188)||(39046580-39046642)
chr8 (99-181)||(45156432-45156514)
chr8 (133-188)||(2784956-2785011)
chr8 (98-179)||(43531971-43532052)
chr8 (61-121)||(17944849-17944909)
chr8 (98-188)||(14097567-14097657)
chr8 (102-187)||(9512480-9512565)
chr8 (112-181)||(43692349-43692418)
chr8 (102-166)||(36933395-36933459)
[»] chr7 (8 HSPs)
chr7 (60-121)||(42629224-42629285)
chr7 (60-136)||(36653751-36653827)
chr7 (60-122)||(31882913-31882975)
chr7 (98-189)||(46273523-46273614)
chr7 (115-188)||(39476415-39476488)
chr7 (112-163)||(4034123-4034174)
chr7 (102-187)||(47441554-47441639)
chr7 (60-136)||(35595284-35595360)
[»] scaffold0276 (1 HSPs)
scaffold0276 (99-167)||(3625-3693)
[»] scaffold0015 (1 HSPs)
scaffold0015 (94-141)||(33609-33656)
[»] scaffold0408 (1 HSPs)
scaffold0408 (98-188)||(7910-8000)
[»] scaffold0012 (1 HSPs)
scaffold0012 (99-180)||(36289-36370)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 113 - 328
Target Start/End: Original strand, 26251583 - 26251798
Alignment:
Q  113 agttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattctattaacacttctcaaagacttgat 212  Q
    |||||||||||| ||||  |||||||||||| ||||| ||||||| ||||||||||| | ||||||||| |||||||| |||||||||||||||||||||    
T  26251583 agttaactagcgcagggacattttcgtcatgactgcagggcgcgatcgaaaagtgcaaggtgaagagcagaattctatcaacacttctcaaagacttgat 26251682  T
Q  213 atgtccatttgtaatactcataaaaagacaggtccatttgcaatactcatttggtgataaaagccgattgattttgagacagtagtgtccattacctcgg 312  Q
    | |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  26251683 aggtccatttgtaatacttatgaaaagacaggtccatttgcactactcatttggtgataaaagccgattgattttgagacaatagtgtccattacctcag 26251782  T
Q  313 ctaatcgtatggttag 328  Q
    |||| | |||||||||    
T  26251783 ctaaccctatggttag 26251798  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 40361312 - 40361217
Alignment:
Q  75 tgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcag 170  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||    
T  40361312 tgtgtaaaattaagtcatgtttgatttacacatgcgttagttaattaacgcaggggtattttcgtcatggctgcaaagcgcgagcgaaaagtgcag 40361217  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 26251511 - 26251404
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagc 159  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | | | |||||  |||||| |||| |||||||||    
T  26251511 gacttaagtcacgcatgtgtaaaattaagtcatgtttgatttacacatgcgttagttaactagcgcaagagcatttttatcatggatgcagggcgcgagc 26251412  T
Q  160 gaaaagtg 167  Q
    ||||||||    
T  26251411 gaaaagtg 26251404  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 34981534 - 34981453
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtca 141  Q
    ||||||| | |||||| ||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||||| ||||    
T  34981534 gacttaactgacgcatatgtaaaattaagtcatgtttgatttacacatgcgttagttaactaacgcaggggtattttggtca 34981453  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 40361739 - 40361828
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||| | || ||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| ||||||| | ||||||    
T  40361739 tttacacgtacgctagttaactagcgcagggatattttggtcatggctgcagggcgcgagcgaaaagtgcagggtgaagagaagaattct 40361828  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 395
Target Start/End: Complemental strand, 26196677 - 26196626
Alignment:
Q  344 agcttcccgacaaagaaatagggtggaattcattcagcgcttgcagactaaa 395  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26196677 agcttcccgacaaagaaatagggtggaattcattcagtgcttgcagactaaa 26196626  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 4675025 - 4674943
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagca 181  Q
    ||||||| ||| |||||||||||||  | ||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||    
T  4675025 tttacacttgcattagttaactagcacatgggtattttggtcatgactgcagggcgcgagcgaaaagtgcagggtgaagagca 4674943  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 34981937 - 34981998
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaacta 121  Q
    ||||||| |||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  34981937 gacttaagtcacacatgtgtaaaattaagtcatgtttgatttacacatacgttagttaacta 34981998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 43501804 - 43501714
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattcta 189  Q
    ||||||| |||| ||||||||||||| ||||| ||||| | ||||| |||| || |||||||||| |||| || ||||||||| |||||||    
T  43501804 tttacacttgcgctagttaactagcgcaggggcattttggacatggttgcagggtgcgagcgaaatgtgctgggtgaagagcaaaattcta 43501714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 49285998 - 49286072
Alignment:
Q  113 agttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    |||||||||||| ||||||||||| |  ||| || || |||||||||||||||||| || |||||||||||||||    
T  49285998 agttaactagcgcaggggtatttttggaatgactacagggcgcgagcgaaaagtgctgggtgaagagcataattc 49286072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 36046130 - 36046041
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||| |||| |||||||||||||  | || ||||| | ||||||||||||| |||||||||| |||| |  ||||||||||||||||    
T  36046130 tttacacttgcgctagttaactagcgcggtggcattttgggcatggctgcaaggtgcgagcgaaatgtgctgagtgaagagcataattct 36046041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 40277161 - 40277225
Alignment:
Q  107 tgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcagg 171  Q
    |||||||||||| || ||||| |||||||||||||||| ||||  |||||||| |||||||||||    
T  40277161 tgcgttagttaattaacgtagaggtattttcgtcatggttgcagagcgcgagcaaaaagtgcagg 40277225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 26973365 - 26973306
Alignment:
Q  129 ggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    |||||||||||||||| |||| |  |||||||||||||||||| ||||||||| ||||||    
T  26973365 ggtattttcgtcatggttgcaggatgcgagcgaaaagtgcagggtgaagagcaaaattct 26973306  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 31825837 - 31825928
Alignment:
Q  96 tgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||| |||| ||||  |||||||||||| | ||| ||||| | |||||||||| ||||||||| ||| ||||||| ||||||||| |||||    
T  31825837 tgattaacacttgcgcaagttaactagcgcaagggcatttttggcatggctgcagggcgcgagcaaaatgtgcagggtgaagagcagaattc 31825928  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 33983844 - 33983753
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattctat 190  Q
    ||||||| || | |||||||||||| ||| || ||||| | |||||||||| || |||||||||| |||| || ||||||||| ||||||||    
T  33983844 tttacacttgtgctagttaactagcatagaggcattttggacatggctgcagggtgcgagcgaaatgtgctgggtgaagagcaaaattctat 33983753  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 20394174 - 20394252
Alignment:
Q  110 gttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||||| || |||| ||| ||||| |  ||||||||| |||||||||||||||||||||  |||||||| ||||||    
T  20394174 gttagttaagtaacgtaagggcatttttgagatggctgcagggcgcgagcgaaaagtgcagggggaagagcaaaattct 20394252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 42704428 - 42704355
Alignment:
Q  98 atttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcagg 171  Q
    |||||||| ||||||||||| ||| || | ||||||||| | || | ||||| |||||||||||||||||||||    
T  42704428 atttacacttgcgttagttagctaacgcatgggtattttgggcaagcctgcagggcgcgagcgaaaagtgcagg 42704355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 54185169 - 54185084
Alignment:
Q  104 acatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattcta 189  Q
    |||||| | |||||||||||| ||||||||||| |  ||| ||||| ||||||| |||||| ||| || ||||||||| |||||||    
T  54185169 acatgcatgagttaactagcgcaggggtatttttggaatgactgcagggcgcgaacgaaaaatgctgggtgaagagcagaattcta 54185084  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 26973958 - 26974014
Alignment:
Q  131 tattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||||||||| ||||| |||| ||||||||||||||||  |||||||| |||||    
T  26973958 tattttcgtcatgactgcagggcgtgagcgaaaagtgcagggagaagagcagaattc 26974014  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 156125 - 156038
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataatt 186  Q
    ||||||| ||||||||||||||| |||| || ||| || |  ||||||||| ||||||||| ||| ||  ||| ||||||||||||||    
T  156125 tttacacttgcgttagttaactaacgtaaggatatatttggaatggctgcagggcgcgagcaaaatgtatagggtgaagagcataatt 156038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 53259808 - 53259741
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagt 166  Q
    ||||||| ||||||| ||||||| || ||| ||||||||||||| |||||| | ||||| ||||||||    
T  53259808 tttacacttgcgttaattaactaacgcaggagtattttcgtcatagctgcaggacgcgaacgaaaagt 53259741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 39834093 - 39834031
Alignment:
Q  109 cgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcagg 171  Q
    ||||||||||||| | || || |||||| |  ||||||||| |||||||||||||||||||||    
T  39834093 cgttagttaactaacataaggatatttttgagatggctgcagggcgcgagcgaaaagtgcagg 39834031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 51721513 - 51721601
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||| ||||||||||||||| || | | | |||||   ||| |||||| ||||||||||||||||| ||| ||||||||| ||||||    
T  51721513 tttacacttgcgttagttaactaacgcaagagcattttgaacatagctgcagggcgcgagcgaaaagtgtagg-tgaagagcaaaattct 51721601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 1860409 - 1860283
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagc 159  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||| ||||| | ||| |||||| || |||||     
T  1860409 gacttaagtcacgcatgtgtaaaattaagtcatgtttgatttacacatgcgttagttaactaacgtaagggcatttttgacattgctgcagggtgcgagt 1860310  T
Q  160 gaaaagtgcaggatgaagagcataatt 186  Q
    |||||||||||| ||||||||| ||||    
T  1860309 gaaaagtgcagggtgaagagcaaaatt 1860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 5741514 - 5741603
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||| ||||||||||||||| || ||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  5741514 tttacacttgcgttagttaactaacgcaggtgtattttggtcatggctgcagggcgcgagcgaaaagtgcagggtgaagagcagaattct 5741603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 30746524 - 30746633
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagc 159  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| || ||||| ||||||| || || |||| ||  |||||    
T  30746524 gacttaagtcacgcatgtgtaaaattaagtcatgtttgatttacacgtgcgttagttaactaacgcaggggcattttcgacaaggttgcagggtacgagc 30746623  T
Q  160 gaaaagtgca 169  Q
    ||||||||||    
T  30746624 gaaaagtgca 30746633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 31778860 - 31778779
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtca 141  Q
    ||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  31778860 gacttaagtcacgcatgtgtaaaattaagtcacgtttgatttacacatgcgttagttaactagcgcaggggtattttggtca 31778779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 5741266 - 5741176
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattcta 189  Q
    ||||||| |||||||| ||||||||| |  |||||||| |||||||||||| | ||||||| ||||||||||| ||||||||| |||||||    
T  5741266 tttacacttgcgttagataactagcgcattggtattttggtcatggctgcaggacgcgagcaaaaagtgcagggtgaagagcagaattcta 5741176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 11599968 - 11600056
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||| | || ||||||||||||| || || ||||| |||||||||||| || |||||||||| |||| || ||||||||| |||||    
T  11599968 tttacacttacgctagttaactagcgcagaggcattttggtcatggctgcagggtgcgagcgaaatgtgctgggtgaagagcaaaattc 11600056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 4362469 - 4362518
Alignment:
Q  144 gctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattctattaa 193  Q
    |||||| |||||||||||||||||| |||||||||||| ||||| |||||    
T  4362469 gctgcagggcgcgagcgaaaagtgctggatgaagagcagaattcaattaa 4362518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 31779505 - 31779550
Alignment:
Q  68 tcacgcatgtgtaaaattaattcatgattgatttacacatgcgtta 113  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||    
T  31779505 tcacgcatgtgtaaaattaaatcatgtttaatttacacatgcgtta 31779550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 30633490 - 30633434
Alignment:
Q  131 tattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    |||||| | ||||||||||| | |||||||||| |||| |||||||||||| |||||    
T  30633490 tattttgggcatggctgcaaagtgcgagcgaaatgtgctggatgaagagcaaaattc 30633434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 187419 - 187527
Alignment:
Q  61 acttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcg 160  Q
    |||||| ||| ||||||||||||| || ||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||| |||| ||||||||||    
T  187419 acttaagtcatgcatgtgtaaaataaaatcatgtttgatttacacatgcgttagttaactagtgcaggggcattttcgtcatggttgcagggcgcgagcg 187518  T
Q  161 aaaagtgca 169  Q
    |||||||||    
T  187519 aaaagtgca 187527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 186979 - 186871
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagc 159  Q
    ||||||| |||| ||||||||||||||| ||||| ||||||||||||| |||||||||| ||||| ||||| ||||||||||| |  ||| |||||||||    
T  186979 gacttaagtcacacatgtgtaaaattaagtcatgtttgatttacacatacgttagttaattagcgcaggggcattttcgtcatagtagcagggcgcgagc 186880  T
Q  160 gaaaagtgc 168  Q
    |||||||||    
T  186879 gaaaagtgc 186871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 256480 - 256391
Alignment:
Q  98 atttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    |||||||| ||||||||||||||| || | ||||||||| | || | ||||| |||  |||| ||| ||||||| ||||||||| |||||    
T  256480 atttacacttgcgttagttaactaacgcatgggtattttgggcacgcctgcagggcctgagcaaaatgtgcagggtgaagagcagaattc 256391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 42882581 - 42882455
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaat-taattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgag 158  Q
    ||||||| ||||||||||||||||  ||| |||  |||  ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||    
T  42882581 gacttaagtcacgcatgtgtaaaaactaagtca--atttttttacacttgcgttagttaactagcgtaggggtattttagtcatggctgcagggcgtgag 42882484  T
Q  159 cgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||||||||| ||||||||| |||||    
T  42882483 cgaaaagtgcagggtgaagagcagaattc 42882455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 19004839 - 19004758
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtca 141  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |||||| |||| ||||    
T  19004839 gacttaagtcacgcatgtgtaaaattaagtcatgtttgatttacacttgcgttagttaactagcgcaggggtgttttggtca 19004758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 38571687 - 38571566
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagc 159  Q
    ||||||| |||| |||||||||| ||||  |||| ||||||||||  |||| |||||||||||||||||||||||||||  |||||||   ||||||||     
T  38571687 gacttaagtcacacatgtgtaaatttaagacatgtttgatttacatttgcgctagttaactagcgtaggggtattttcggtatggctgtcgggcgcgagt 38571588  T
Q  160 gaaaagtgcaggatgaagagca 181  Q
    |||||||||| | |||||||||    
T  38571587 gaaaagtgcatggtgaagagca 38571566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 42808651 - 42808737
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataatt 186  Q
    ||||||| ||||||||||||||| || ||| |||||||| ||||||||||| || |||||||||| |||||||| | |||||||||||    
T  42808651 tttacacttgcgttagttaactaacgcaggagtattttcatcatggctgcagggtgcgagcgaaaggtgcagga-ggagagcataatt 42808737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 19004930 - 19005008
Alignment:
Q  63 ttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtca 141  Q
    |||| |||||||||||||||||||| ||| | ||||||||||| |||||||||||||||| | ||| ||||||| ||||    
T  19004930 ttaagtcacgcatgtgtaaaattaagtcaagtttgatttacacttgcgttagttaactagtgcaggagtattttggtca 19005008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 44158316 - 44158267
Alignment:
Q  73 catgtgtaaaattaattcatgattgatttacacatgcgttagttaactag 122  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||||||    
T  44158316 catgtgtaaaattaattcacgtttgatttacacatgtgttagttaactag 44158267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 35049581 - 35049501
Alignment:
Q  61 acttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtca 141  Q
    |||||| || || |||||||||||||| ||| | |||||||||||||||||||||||| ||| | ||||| ||||| ||||    
T  35049581 acttaagtcgcgtatgtgtaaaattaaatcacgtttgatttacacatgcgttagttaagtagagcaggggaattttggtca 35049501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 745760 - 745871
Alignment:
Q  70 acgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgca 169  Q
    ||||||||||||| | ||  |||| |||||||| |  || | ||||||||||||| ||| | ||||||| ||||||||||  |||| || ||||||||||    
T  745760 acgcatgtgtaaattaaagacatgtttgatttatatttgtgctagttaactagcgcaggtgcattttcggcatggctgcagagcgcaagtgaaaagtgca 745859  T
Q  170 ggatgaagagca 181  Q
    || |||||||||    
T  745860 gggtgaagagca 745871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 33710925 - 33710848
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaa-ttaattcatgattgatttacacatgcgttagttaactagcgtaggggtatttt 136  Q
    ||||||| |||||||||||||||| |||| ||| |  |  ||||||| |||||||||||||||||| |||||||||||    
T  33710925 gacttaagtcacgcatgtgtaaaaattaactcacgtattttttacacttgcgttagttaactagcgcaggggtatttt 33710848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 36074176 - 36074253
Alignment:
Q  110 gttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||||||||||||||||||||||| |  ||| ||||| ||||||| ||||| ||| |||  |||||||| |||||    
T  36074176 gttagttaactagcgtaggggtatttttggaatgactgcagggcgcgaacgaaatgtgtagggggaagagcagaattc 36074253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 5289856 - 5289764
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattctatt 191  Q
    ||||||| |||| |||||||||| || ||||||||||| | ||||| |||| |  |||||||||| |||| || ||||||| | |||||||||    
T  5289856 tttacacttgcgctagttaactaacgcaggggtattttgggcatggttgcaggatgcgagcgaaatgtgctgggtgaagagtaaaattctatt 5289764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 6729666 - 6729753
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||| |||| ||||||||||||| ||||| ||||| | ||||||||| ||| |||||||||| |||  || ||||||||| |||||    
T  6729666 tttacacttgcgatagttaactagcgcaggggcattttgggcatggctgc-aggtgcgagcgaaatgtgttgggtgaagagcagaattc 6729753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 34618994 - 34618922
Alignment:
Q  115 ttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||||||||||||||||||   |||||||||| || |||||||||| |||| || | ||||||| |||||    
T  34618994 ttaactagcgtaggggtattttgagcatggctgcagggtgcgagcgaaatgtgctggttaaagagcagaattc 34618922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 42807459 - 42807387
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcagg 171  Q
    ||||||| ||||||||||||||| || | | |||||||||| |||| |||| ||||||| |||||||| ||||    
T  42807459 tttacacttgcgttagttaactaacgcatgagtattttcgttatggttgcagggcgcgaacgaaaagtacagg 42807387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 6402420 - 6402479
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgag 158  Q
    ||||||| | ||||||||||||||||||||| |||||| |||||| ||||| || |||||    
T  6402420 tttacacttacgttagttaactagcgtagggatattttggtcatgactgcagggtgcgag 6402479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 12874378 - 12874457
Alignment:
Q  107 tgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataatt 186  Q
    |||| |||||||||||| ||||| ||||||||  ||| ||||| ||||||||||   ||||| |||||||||||| ||||    
T  12874378 tgcgctagttaactagcatagggatattttcgaaatgcctgcagggcgcgagcgtttagtgctggatgaagagcagaatt 12874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 3815770 - 3815721
Alignment:
Q  139 tcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||||||||| |||||||||||||| || | ||||||||| ||||||    
T  3815770 tcatggctgcaagacgcgagcgaaaagtacaaggtgaagagcagaattct 3815721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 9826738 - 9826693
Alignment:
Q  143 ggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||| |||| |||||||| ||||||||||||||||| ||||||    
T  9826738 ggctgcagggcgtgagcgaaatgtgcaggatgaagagcagaattct 9826693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 7634041 - 7634154
Alignment:
Q  75 tgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatg 174  Q
    ||||||||||||| | ||| || |||||||||||||||||||||||| |||| ||| ||||| | |||||||||| |||||||| |||||| ||||| ||    
T  7634041 tgtgtaaaattaacttatgtttaatttacacatgcgttagttaactaacgtaagggcatttttgacatggctgcagggcgcgagtgaaaagagcagggtg 7634140  T
Q  175 aagagcataattct 188  Q
    ||||||||||||||    
T  7634141 aagagcataattct 7634154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 25868099 - 25868017
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagca 181  Q
    ||||||| ||||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||||  ||||||||    
T  25868099 tttacacttgcgttagttaactagcgtagggttattttggtgatggctgcagggcgcgagcgaaaagtgcagggggaagagca 25868017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 29303589 - 29303710
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagc 159  Q
    ||||||| || || |||||||||||||| | ||| |||||||||||||||||||||||||||||| ||| | ||||||   | || |||| || ||||||    
T  29303589 gacttaagtcgcgtatgtgtaaaattaagtaatgtttgatttacacatgcgttagttaactagcgcaggagcattttcaataaggttgcagggtgcgagc 29303688  T
Q  160 gaaaagtgcaggatgaagagca 181  Q
    ||||||||||||| | ||||||    
T  29303689 gaaaagtgcaggacgtagagca 29303710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 16060807 - 16060875
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtg 167  Q
    ||||||| ||| |||||||| ||| ||| ||||||||| |||||||||||| |||||||||||||||||    
T  16060807 tttacacttgctttagttaattagtgtaagggtattttggtcatggctgcagggcgcgagcgaaaagtg 16060875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 34954921 - 34955009
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||| |||| ||||||||||||| ||||| ||||| | ||||||||||||| |||||||||| |||  || ||||||||| |||||    
T  34954921 tttacacttgcggtagttaactagcgcaggggcattttaggcatggctgcaaggtgcgagcgaaatgtgatgggtgaagagcagaattc 34955009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 6408623 - 6408552
Alignment:
Q  109 cgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagc 180  Q
    ||||||||||||| || ||||||||||||| ||||||||||  ||| |||||||||||| ||| ||||||||    
T  6408623 cgttagttaactaacgcaggggtattttcgccatggctgcagagcgtgagcgaaaagtggagggtgaagagc 6408552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 21102294 - 21102380
Alignment:
Q  107 tgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattctattaa 193  Q
    ||||||||||||||| || | ||||||||| | || |||| || |||||||||||||||||||||  |||||||| |||||| ||||    
T  21102294 tgcgttagttaactaacgcatgggtattttgggcaaggctacagggcgcgagcgaaaagtgcaggtggaagagcaaaattcttttaa 21102380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 7633520 - 7633431
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||||||||||||||||||| |||| ||| ||||| |  ||||||||| | | |||| ||||| |||||||||||||| | ||||||    
T  7633520 tttacacatgcgttagttaactaacgtaaggggatttttgctatggctgcaggacacgagtgaaaaatgcaggatgaagagtaaaattct 7633431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 43275595 - 43275531
Alignment:
Q  107 tgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcagg 171  Q
    ||||||||| ||||| |||| ||| ||||| |  ||||||||| |||||||||||||||||||||    
T  43275595 tgcgttagtaaactaacgtaagggcatttttggaatggctgcagggcgcgagcgaaaagtgcagg 43275531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 26092555 - 26092496
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgag 158  Q
    ||||||| |||||||||||||||||| | |||||||||||  ||| ||||| ||||||||    
T  26092555 tttacacttgcgttagttaactagcgcaagggtattttcgaaatgcctgcagggcgcgag 26092496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 1080945 - 1080864
Alignment:
Q  107 tgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    |||| ||||||||||||| || |||||||| | ||||||| ||||| |||||||||| || | |  ||||||||| ||||||    
T  1080945 tgcgctagttaactagcgcagaggtattttagacatggctacaaggtgcgagcgaaatgtactgagtgaagagcagaattct 1080864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 9942741 - 9942782
Alignment:
Q  126 aggggtattttcgtcatggctgcaaggcgcgagcgaaaagtg 167  Q
    ||||||||||||| |||||||||| |||||||| ||||||||    
T  9942741 aggggtattttcggcatggctgcagggcgcgagtgaaaagtg 9942782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 43276122 - 43276203
Alignment:
Q  107 tgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    |||||||||||| || | || ||||||||| |  ||||||| |  |||||||||||||||||||||  ||||||| ||||||    
T  43276122 tgcgttagttaagtaacataagggtatttttgggatggctgtagagcgcgagcgaaaagtgcaggaaaaagagcagaattct 43276203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 14410829 - 14410885
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgc 155  Q
    |||||||  ||||||||||||||||| ||||||||||||| ||   |||||||||||    
T  14410829 tttacactcgcgttagttaactagcgcaggggtattttcggcaacactgcaaggcgc 14410885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 28784933 - 28784969
Alignment:
Q  151 ggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  28784933 ggcgcgagcaaaaagtgcaggatgaagagcagaattc 28784969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 36754184 - 36754275
Alignment:
Q  100 ttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattctatt 191  Q
    |||||| ||||||||||||||| || ||||||||||| ||| | | ||||||||| |||||||||||||||||||||||||| |||||||||    
T  36754184 ttacacttgcgttagttaactaacgcaggggtattttggtcgtagttgcaaggcgtgagcgaaaagtgcaggatgaagagcagaattctatt 36754275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 4041097 - 4041179
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagca 181  Q
    ||||||| |||||||||||||||||  | ||||||||| |||||| ||||| ||| ||||||||||||||||| || ||||||    
T  4041097 tttacacttgcgttagttaactagcacatgggtattttggtcatgactgcagggcacgagcgaaaagtgcagggtggagagca 4041179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 4040917 - 4040836
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagc 180  Q
    ||||||| |||||||||||| ||||| |||| |||||| |||||||||||| ||||| || ||||| |||||| ||||||||    
T  4040917 tttacacttgcgttagttaattagcgcagggatattttggtcatggctgcagggcgcaagtgaaaaatgcagggtgaagagc 4040836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 25226828 - 25226738
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattcta 189  Q
    ||||||| ||||||||||||||| |||| |   |||||||  ||||||||| |||| |||||| |||||||||  ||||||||||||||||    
T  25226828 tttacacttgcgttagttaactaacgtaagaacattttcgggatggctgcagggcgtgagcgacaagtgcagggggaagagcataattcta 25226738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 45004492 - 45004569
Alignment:
Q  108 gcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataatt 186  Q
    |||||||||||||| ||||||||||||||   || |||||||  ||||||||||||||||||||| |||||||| ||||    
T  45004492 gcgttagttaactaacgtaggggtattttgagcaaggctgcagagcgcgagcgaaaagtgcagga-gaagagcagaatt 45004569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 6778686 - 6778777
Alignment:
Q  98 atttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattcta 189  Q
    |||||||| || |||||||||||| |||| ||||||||| | |   ||| || |||||||||||||||||||||  |||||||| |||||||    
T  6778686 atttacacttgtgttagttaactaacgtatgggtattttggactatgcttcagggcgcgagcgaaaagtgcagggggaagagcaaaattcta 6778777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 53038918 - 53038839
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtca 141  Q
    ||||||| |||| ||| |||||||||||||| |  ||| ||||||||||||||||||||||| |  ||||||||||| ||||    
T  53038918 gacttaagtcacacatttgtaaaattaattcgt--ttgttttacacatgcgttagttaactaacacaggggtattttggtca 53038839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 39708287 - 39708368
Alignment:
Q  61 acttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcat 142  Q
    |||||| ||| |||||| ||||||||| |||   ||||||||||||||||||||||||||| ||   ||||||||| |||||    
T  39708287 acttaagtcatgcatgtataaaattaagtcacatttgatttacacatgcgttagttaactaacgcgtgggtattttggtcat 39708368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 46637090 - 46637171
Alignment:
Q  107 tgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    |||||||||||||||||||| || ||  || |  | ||||||| ||||||||| ||| |||||||||| |||||||||||||    
T  46637090 tgcgttagttaactagcgtaaggataaatttggaacggctgcatggcgcgagcaaaatgtgcaggatggagagcataattct 46637171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 39417919 - 39417994
Alignment:
Q  113 agttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    |||||||||||| | ||||||||| | |||||||| | ||||||||| ||| ||| ||| ||||||||| ||||||    
T  39417919 agttaactagcgcaagggtatttttggcatggctggagggcgcgagcaaaatgtggagggtgaagagcagaattct 39417994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 53630327 - 53630398
Alignment:
Q  98 atttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgca 169  Q
    |||||||| ||||||||||||||| || | ||| ||||| | || | ||||| |||||||||||||||||||    
T  53630327 atttacacttgcgttagttaactaacgcatgggaattttggacaagcctgcagggcgcgagcgaaaagtgca 53630398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 7789968 - 7790038
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgca 169  Q
    ||||||| ||||||||||||||| |||| ||| ||||| |  ||||||||| | ||||| |||||||||||    
T  7789968 tttacacctgcgttagttaactaacgtaagggcatttttgggatggctgcaggacgcgaacgaaaagtgca 7790038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 46636604 - 46636562
Alignment:
Q  151 ggcgcgagcgaaaagtgcaggatgaagagcataattctattaa 193  Q
    |||||||||||||||||| || |||||||||||||||| ||||    
T  46636604 ggcgcgagcgaaaagtgctgggtgaagagcataattcttttaa 46636562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 25227358 - 25227438
Alignment:
Q  107 tgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    |||||||||||| || |||| || ||||||    ||||||||| | |||||||||||||||||||  |||||||| |||||    
T  25227358 tgcgttagttaagtaacgtaaggatatttttaggatggctgcaggacgcgagcgaaaagtgcagggggaagagcagaattc 25227438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 41650945 - 41651033
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||| |||| ||||||||||||| | ||| ||||| | |||| ||| | || |||||||||| |||| || ||||||||| |||||    
T  41650945 tttacacttgcgctagttaactagcggatgggcattttgggcatgactgtagggtgcgagcgaaatgtgctgggtgaagagcagaattc 41651033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 52562779 - 52562831
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaag 151  Q
    ||||||| |||| ||||||||||||| ||||||||||| | || |||||||||    
T  52562779 tttacacttgcgctagttaactagcgcaggggtattttggacaaggctgcaag 52562831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 11435308 - 11435396
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||| |||||||||||||||||||| | ||||||| ||||||| |||| |||||||| |||||||||||| ||||||||| |||||    
T  11435308 tttacacttgcgttagttaactagcgtatgagtattttggtcatggttgcagggcgcgagtgaaaagtgcagggtgaagagcagaattc 11435396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 44527994 - 44527896
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgag 158  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |   |||||||   |||||||||| ||||||||    
T  44527994 gacttaagtcacgcatgtgtaaaattaagtcatgtttgatttacacatgcgttagttaactaacgcaaaagtattttaagcatggctgcagggcgcgag 44527896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 3757478 - 3757422
Alignment:
Q  131 tattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    |||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||    
T  3757478 tattttcgtcatggttgcagggcgcgagcgaaaagtgcaggaggaagagcaaaattc 3757422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 24313853 - 24313802
Alignment:
Q  70 acgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaacta 121  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  24313853 acgcatgtgtaaaattaagtcacgtttgatttacacatgcgttagttaacta 24313802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 43514892 - 43514970
Alignment:
Q  113 agttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattctatt 191  Q
    |||||||||| | || |||||||| |  ||| ||||| |||||||||||||||||| || |||||||||||||||||||    
T  43514892 agttaactagtgcagaggtatttttggaatgactgcagggcgcgagcgaaaagtgctgggtgaagagcataattctatt 43514970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 11434739 - 11434683
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgc 155  Q
    ||||||| |||||||||||||||||| ||| ||||||| |||||||||||| |||||    
T  11434739 tttacacttgcgttagttaactagcgcaggagtattttggtcatggctgcagggcgc 11434683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 43137663 - 43137572
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattctat 190  Q
    ||||||| |||| ||||||||||||| |||| |||||| | ||||| |||| |  |||||||||| || | |||||||||||| ||||||||    
T  43137663 tttacacttgcgctagttaactagcgcagggctattttggacatggttgcaggatgcgagcgaaatgtactggatgaagagcaaaattctat 43137572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 28539524 - 28539435
Alignment:
Q  98 atttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    |||||||| |||||||||| ||||  | | ||||||||| | || ||||||| |||||||||||||||||||||  |||||||| ||||||    
T  28539524 atttacacttgcgttagtttactaatgcatgggtattttaggcaaggctgcagggcgcgagcgaaaagtgcagg-ggaagagcaaaattct 28539435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 28485901 - 28485812
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||| ||| ||||||||||| |||| | | ||||| |  ||||||||| | |||||||||||||||||||  |||||||| ||||||    
T  28485901 tttacacttgcattagttaactaacgtaagagcatttttgggatggctgcaggtcgcgagcgaaaagtgcagggggaagagcagaattct 28485812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 7013834 - 7013746
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||| |||| ||||||||||||| ||||  ||||| | ||||| |||| || ||||||||||  | | ||||||||||||||||||    
T  7013834 tttacacgtgcgctagttaactagcgcagggacattttggacatggatgcagggtgcgagcgaaatatactggatgaagagcataattc 7013746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 43194268 - 43194340
Alignment:
Q  115 ttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    |||||||||| | || |||||| |  |||| |||| |||||||||||||||||||||||| |||||| |||||    
T  43194268 ttaactagcgcatggatattttgggaatggttgcagggcgcgagcgaaaagtgcaggatggagagcaaaattc 43194340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 46090223 - 46090135
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||| || ||||||||| || | || || |||||| |  ||||||||| | |||||||||||||||||||| |||||||| |||||    
T  46090223 tttacacttgtgttagttaattaacataaggatatttttgggatggctgcaggacgcgagcgaaaagtgcaggaggaagagcagaattc 46090135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 48569383 - 48569475
Alignment:
Q  96 tgatttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||| |||| ||||  |||||||||||| | ||| ||||| | |||||| ||| ||||||||| ||| ||||||| ||||||||| ||||||    
T  48569383 tgattaacacttgcgcaagttaactagcgcaagggcatttttggcatggcagcagggcgcgagcaaaatgtgcagggtgaagagcagaattct 48569475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 37919701 - 37919634
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagt 166  Q
    ||||||||| |||||||||||||||| | ||| ||||||| || || |||| || |||||||||||||    
T  37919701 tttacacatacgttagttaactagcgcatgggcattttcggcaaggttgcatggtgcgagcgaaaagt 37919634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 10309554 - 10309643
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||| |||| ||||||||||||| ||||| ||||| | ||||||||||  | ||  |||||| |||| || ||||||||| ||||||    
T  10309554 tttacacgtgcgctagttaactagcgcaggggcattttgggcatggctgcatagtgccggcgaaatgtgctgggtgaagagcaaaattct 10309643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 45886942 - 45886893
Alignment:
Q  109 cgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgag 158  Q
    |||||||||||||||| |||||||||||||  ||| ||||| ||||||||    
T  45886942 cgttagttaactagcgcaggggtattttcgaaatgtctgcagggcgcgag 45886893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 28486441 - 28486489
Alignment:
Q  141 atggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattcta 189  Q
    |||| |||||||| |||||||||||||||||| |||||| | |||||||    
T  28486441 atggttgcaaggcacgagcgaaaagtgcaggaggaagagaagaattcta 28486489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 7130679 - 7130761
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagca 181  Q
    ||||||| ||||||||||||||| |  ||||||||||| ||||| | || ||||||||||||||||||||||| |||||||||    
T  7130679 tttacacttgcgttagttaactaacacaggggtattttagtcatagttgtaaggcgcgagcgaaaagtgcagggtgaagagca 7130761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 45155997 - 45155920
Alignment:
Q  110 gttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    ||||||||| ||||| | | ||||||| |||||||||| | ||||||||||||||||||||| |||||||||| ||||    
T  45155997 gttagttaattagcgcaagagtattttggtcatggctgtagggcgcgagcgaaaagtgcagggtgaagagcattattc 45155920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 39046642 - 39046580
Alignment:
Q  126 aggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    |||||||||||||||||||||||| | |||||||||||||||||||    |||||||||||||    
T  39046642 aggggtattttcgtcatggctgcaggacgcgagcgaaaagtgcaggggagagagcataattct 39046580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 45156432 - 45156514
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagca 181  Q
    ||||||| || |||||||||||| || ||| || |||| |||||||||||| ||||||  ||||||||||||| |||||||||    
T  45156432 tttacacttgtgttagttaactaacgcaggagttttttggtcatggctgcagggcgcggacgaaaagtgcagggtgaagagca 45156514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 2785011 - 2784956
Alignment:
Q  133 ttttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||| ||||||    
T  2785011 ttttcgtcatggctgcagggcacgagcgaaaagtgcagggagaagagcagaattct 2784956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 43532052 - 43531971
Alignment:
Q  98 atttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagag 179  Q
    |||||||| ||||||||||||||| || ||||||||||| |  | ||||||  |||| ||||||||||||  ||||||||||    
T  43532052 atttacacctgcgttagttaactaacgcaggggtattttgggaaaggctgccgggcgagagcgaaaagtgttggatgaagag 43531971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 17944849 - 17944909
Alignment:
Q  61 acttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaacta 121  Q
    |||||| |||| ||||||||||||||| ||| | ||| |||||||||| ||||||||||||    
T  17944849 acttaagtcacacatgtgtaaaattaagtcacgtttgttttacacatgtgttagttaacta 17944909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 14097567 - 14097657
Alignment:
Q  98 atttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    |||||||| ||||||||||||||| |  |  |||||||| | || || || | |||||||||||||||||||||  |||||||| ||||||    
T  14097567 atttacacttgcgttagttaactatcacataggtattttgggcaaggttggagggcgcgagcgaaaagtgcagggggaagagcaaaattct 14097657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 9512480 - 9512565
Alignment:
Q  102 acacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    |||| ||||||| ||||||| || | ||||||||||  || || ||||  |||||||| ||||||||||| ||||||||| |||||    
T  9512480 acacttgcgttacttaactaacgcatgggtattttcagcaaggttgcagagcgcgagcaaaaagtgcagggtgaagagcagaattc 9512565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 43692418 - 43692349
Alignment:
Q  112 tagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagca 181  Q
    ||||||||||||| | ||| ||||| | |||||||||| ||||||| | ||| ||||||| |||||||||    
T  43692418 tagttaactagcgcaagggcatttttgacatggctgcagggcgcgaacaaaacgtgcagggtgaagagca 43692349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 36933395 - 36933459
Alignment:
Q  102 acacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagt 166  Q
    |||| |||||||||||||||||| |  |||||||| |  ||||||||| ||||||| ||||||||    
T  36933395 acacttgcgttagttaactagcgcaaaggtattttaggaatggctgcagggcgcgaacgaaaagt 36933459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 42629224 - 42629285
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaacta 121  Q
    ||||||| ||| |||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  42629224 gacttaagtcatgcatgtgtaaaattaagtcatgtatgatttacacatgcgttagttaacta 42629285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 36653751 - 36653827
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtatttt 136  Q
    ||||||| |||||||| | ||||||||| ||| | ||||||||||||||||||||||||||| || |||| ||||||    
T  36653751 gacttaagtcacgcatatataaaattaagtcacgtttgatttacacatgcgttagttaactaacgcagggatatttt 36653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 31882913 - 31882975
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactag 122  Q
    ||||||| ||||||||||||||||||||  |||| ||  ||||||||||||||||||||||||    
T  31882913 gacttaagtcacgcatgtgtaaaattaagacatgtttattttacacatgcgttagttaactag 31882975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 46273523 - 46273614
Alignment:
Q  98 atttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattcta 189  Q
    |||||||| ||||||||||||||| || | |||||||||   || | ||||||| |||||||||||||||||||   ||||||| |||||||    
T  46273523 atttacacttgcgttagttaactaacgcatgggtattttgaacaagactgcaagacgcgagcgaaaagtgcagggcaaagagcaaaattcta 46273614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 39476488 - 39476415
Alignment:
Q  115 ttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    ||||||| |||| ||| |||||   |||||||||||||||||||| ||| ||||||| ||||||||| ||||||    
T  39476488 ttaactaacgtaagggcatttttaacatggctgcaaggcgcgagcaaaatgtgcagggtgaagagcagaattct 39476415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 4034174 - 4034123
Alignment:
Q  112 tagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaa 163  Q
    |||||||||||||||||||||||||   ||||||||||||| ||||| ||||    
T  4034174 tagttaactagcgtaggggtattttgaacatggctgcaaggtgcgagggaaa 4034123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 47441639 - 47441554
Alignment:
Q  102 acacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattc 187  Q
    |||| ||||||| ||||||| || || || ||||| | || |||| || | ||||||| ||||||||||| |||||||||||||||    
T  47441639 acacttgcgttacttaactaacgcagaggcatttttggcaaggctacaggacgcgagcaaaaagtgcagggtgaagagcataattc 47441554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 35595284 - 35595360
Alignment:
Q  60 gacttaaatcacgcatgtgtaaaattaattcatgattgatttacacatgcgttagttaactagcgtaggggtatttt 136  Q
    ||||||| || || || ||||||||||| ||||  ||| ||||||| |||||||||||||||  | |||||||||||    
T  35595284 gacttaagtcccgtatatgtaaaattaaatcatatttgttttacacttgcgttagttaactaatgcaggggtatttt 35595360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 3625 - 3693
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtg 167  Q
    ||||||| |||||| |||||||| || ||| ||||||| |||||||||||| |||||||||||||||||    
T  3625 tttacacttgcgttggttaactaacgcaggagtattttagtcatggctgcagggcgcgagcgaaaagtg 3693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 33609 - 33656
Alignment:
Q  94 attgatttacacatgcgttagttaactagcgtaggggtattttcgtca 141  Q
    |||| ||||||| ||||||||||||||| |||||||||||||| ||||    
T  33609 attgttttacacttgcgttagttaactaacgtaggggtattttggtca 33656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 7910 - 8000
Alignment:
Q  98 atttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagcataattct 188  Q
    |||||||| ||||||||||||||| |  |  |||||||| | || || || | |||||||||||||||||||||  |||||||| ||||||    
T  7910 atttacacttgcgttagttaactatcacataggtattttgggcaaggttggagggcgcgagcgaaaagtgcagggggaagagcaaaattct 8000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 36289 - 36370
Alignment:
Q  99 tttacacatgcgttagttaactagcgtaggggtattttcgtcatggctgcaaggcgcgagcgaaaagtgcaggatgaagagc 180  Q
    ||||||| ||||||||||||||| || | ||| ||||| |  ||||||||| | |||||| ||||||||| || ||||||||    
T  36289 tttacacttgcgttagttaactaacgcaagggcatttttgggatggctgcaggacgcgagtgaaaagtgctgggtgaagagc 36370  T

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