View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_366 (Length: 209)
Name: NF11309A_low_366
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_366 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 3e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 36474224 - 36474414
Alignment:
| Q |
19 |
aatatgattagcaaagttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttgaaaaagaagtg |
118 |
Q |
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| T |
36474224 |
aatatgattagcaaagttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttggaaaagaagtg |
36474323 |
T |
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| Q |
119 |
ctaaatcatagtcaatcacaggcaggtcaagtgttggatgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcat |
209 |
Q |
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| T |
36474324 |
ctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcat |
36474414 |
T |
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Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 36465057 - 36465236
Alignment:
| Q |
30 |
caaagttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttgaaaaagaagtgctaaatcatag |
129 |
Q |
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| T |
36465057 |
caaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttgaaaaagaagtgctaaatcatag |
36465156 |
T |
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| Q |
130 |
tcaatcacaggcaggtcaagtgttggatgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcat |
209 |
Q |
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| T |
36465157 |
tcaatcacaggcaggtcaagtgttgggtgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatcat |
36465236 |
T |
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