View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_370 (Length: 208)
Name: NF11309A_low_370
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_370 |
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| [»] chr2 (5 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 2803404 - 2803217
Alignment:
| Q |
21 |
tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggtaacaattgtaggttaaaagt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2803404 |
tttcaaataagaaataacccttaaatatactttgtttcttacctaaggcaatgaaaaaatgtgataccaacaccaacggcaacaattgtaggttaaaagt |
2803305 |
T |
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| Q |
121 |
ctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgt |
208 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2803304 |
ctcacattgtttaaagaagtggaggttgaacattctataaaagagatgacccataaacttaatgtcttaacgttttgggtaaaagtgt |
2803217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 33561573 - 33561502
Alignment:
| Q |
137 |
aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgt |
208 |
Q |
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||||||||||| |||| | ||||| |||| |||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
33561573 |
aagtggaggttaaacactttataagtgagaggacccataaactcattgtcttaaggttttgggtaagagtgt |
33561502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 30312825 - 30312896
Alignment:
| Q |
137 |
aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgt |
208 |
Q |
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|||||||||||||||| | ||||| |||||||||||||||| | | ||||| ||||||||||||||||| |
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| T |
30312825 |
aagtggaggttgaacactttataacttagatgacccataaacttatttccttaaggttttgggtaaaagtgt |
30312896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 13766795 - 13766882
Alignment:
| Q |
112 |
gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaa--gagatgacccataaactcaatgtcttaacgttttg |
197 |
Q |
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|||| |||||| ||||| |||| | ||||||||||||| ||| ||||||| |||||||| |||||||||||| ||||| |||||| |
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| T |
13766795 |
gttagaagtctaacattgtttagaaaagtggaggttgattattttataaaagtgagatgactaataaactcaatgacttaaggttttg |
13766882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 36005971 - 36005931
Alignment:
| Q |
168 |
gacccataaactcaatgtcttaacgttttgggtaaaagtgt |
208 |
Q |
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|||||||||||||| || ||||| ||||||||||||||||| |
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| T |
36005971 |
gacccataaactcattgccttaaggttttgggtaaaagtgt |
36005931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 8481962 - 8482033
Alignment:
| Q |
137 |
aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgt |
208 |
Q |
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|||||||||||||||| | |||||| |||||||| |||||||||| || ||||| |||||||||| ||||| |
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| T |
8481962 |
aagtggaggttgaacactttataaatgagatgactcataaactcattgccttaagattttgggtaagagtgt |
8482033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 5034943 - 5034876
Alignment:
| Q |
137 |
aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaa |
204 |
Q |
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||||||||||||| || | ||||| |||||||||||| |||||||||| |||| ||||||| ||||| |
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| T |
5034943 |
aagtggaggttgaccactttataagtgagatgacccatcaactcaatgttttaaggttttggataaaa |
5034876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 27226716 - 27226675
Alignment:
| Q |
137 |
aagtggaggttgaacattctataaaagagatgacccataaac |
178 |
Q |
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||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
27226716 |
aagtggaggttgatcattttataaatgagatgacccataaac |
27226675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 42480533 - 42480611
Alignment:
| Q |
112 |
gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa |
190 |
Q |
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||||||||||||| | ||||| || |||||||||||||||| | | ||| ||||||| |||||||||| ||||||||| |
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| T |
42480533 |
gttaaaagtctcatactatttgaaaaagtggaggttgaacaatatgtaagtgagatgatccataaactcgatgtcttaa |
42480611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 22028458 - 22028418
Alignment:
| Q |
168 |
gacccataaactcaatgtcttaacgttttgggtaaaagtgt |
208 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
22028458 |
gacccataaactcattgtcttaatgttttgggtaagagtgt |
22028418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 34544142 - 34544214
Alignment:
| Q |
137 |
aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacg-ttttgggtaaaagtgt |
208 |
Q |
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|
||||||||||||| || | |||||| |||| |||||||||||||| || ||||| | |||||||||| ||||| |
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| T |
34544142 |
aagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggtttttgggtaagagtgt |
34544214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 10351325 - 10351222
Alignment:
| Q |
107 |
tgtaggttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaa--cgttttgggtaaaa |
204 |
Q |
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|
|||| |||| |||||||||||| |||| ||| |||||||||||||| |||| || |||||||||||||||| |||||||| |||||||||||| |
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| T |
10351325 |
tgtaagttagaagtctcacattggctaaaaaagcggaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaa |
10351226 |
T |
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| Q |
205 |
gtgt |
208 |
Q |
| |
|
|||| |
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| T |
10351225 |
gtgt |
10351222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 1188710 - 1188639
Alignment:
| Q |
137 |
aagtggaggttgaacattctataaaagagatgacccataaactcaatgtcttaacgttttgggtaaaagtgt |
208 |
Q |
| |
|
|||||||||||||| ||| ||||| |||| ||| |||||||||| || |||| ||||||||||||||||| |
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| T |
1188710 |
aagtggaggttgaatattttataagtgagaagactcataaactcattgctttaaggttttgggtaaaagtgt |
1188639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 32594807 - 32594767
Alignment:
| Q |
168 |
gacccataaactcaatgtcttaacgttttgggtaaaagtgt |
208 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
32594807 |
gacccataaactcattgtcttaaggttttgggtaagagtgt |
32594767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 260846 - 260805
Alignment:
| Q |
137 |
aagtggaggttgaacattctataaaagagatgacccataaac |
178 |
Q |
| |
|
||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
260846 |
aagtggaggttgatcattttataaatgagatgacccataaac |
260805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 32930698 - 32930775
Alignment:
| Q |
112 |
gttaaaagtctcacattatttaaagaagtggaggttgaacattctataaaagagatgacccataaactcaatgtctta |
189 |
Q |
| |
|
|||| |||||| | ||| |||| | |||| || |||||||||| ||||| |||||||| |||||||||||||||||| |
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| T |
32930698 |
gttagaagtcttatattgtttagaaaagtagaagttgaacattttataagtgagatgactcataaactcaatgtctta |
32930775 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 21619136 - 21619096
Alignment:
| Q |
168 |
gacccataaactcaatgtcttaacgttttgggtaaaagtgt |
208 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
21619136 |
gacccataaacccattgtcttaaggttttgggtaaaagtgt |
21619096 |
T |
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