View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_38 (Length: 410)
Name: NF11309A_low_38
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 21 - 410
Target Start/End: Complemental strand, 45099455 - 45099066
Alignment:
| Q |
21 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
120 |
Q |
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| T |
45099455 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
45099356 |
T |
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| Q |
121 |
aatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
220 |
Q |
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| T |
45099355 |
aatgtaggaggtatgaaaataactccttttaatgacaccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
45099256 |
T |
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| Q |
221 |
tagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgactgctcaacagatgaatagggaaaa |
320 |
Q |
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| T |
45099255 |
cagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcgcctgaaaatgtttacatgactgctcaacagatgaatagggaaaa |
45099156 |
T |
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| Q |
321 |
ctcaagtttagcttcaaggtttaacataacatggaattttcctttggctcgtgatggcgtttcacatttgatgcggttgtatttttgtga |
410 |
Q |
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| T |
45099155 |
ctcaagtttagcttcaaggtttaatataacatggaattttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtga |
45099066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 97 - 317
Target Start/End: Original strand, 17348638 - 17348858
Alignment:
| Q |
97 |
gttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttgg |
196 |
Q |
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| T |
17348638 |
gttttagaaactattcataggattaatgttggaggtgaaaaattaactccttttaatgataccctttggagaacatggattcctgataaggattttctgg |
17348737 |
T |
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| Q |
197 |
tttttaaggaagcagctaaacatgtagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgac |
296 |
Q |
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| T |
17348738 |
tttttaaggatgcagctaaggctgtagtgagcactcacacaccagattatcagaaagggggcgcggctagagagatcgcgccggatagtgtttatatgac |
17348837 |
T |
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| Q |
297 |
tgctcaacagatgaataggga |
317 |
Q |
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| T |
17348838 |
tgctcaggagatgaataggga |
17348858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 17363885 - 17363945
Alignment:
| Q |
96 |
ggttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgat |
156 |
Q |
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| T |
17363885 |
ggttttagaaactattcataggattaacgttgatggtttgaaaataactccctttaatgat |
17363945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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