View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_384 (Length: 202)
Name: NF11309A_low_384
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_384 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 45179856 - 45179694
Alignment:
| Q |
20 |
tgttgcgtagtggggttgattgattcaaccgacagtttgcacatcttgaggaacattatggcaaaggcggacgaagttcaccattgcagagacagcatgc |
119 |
Q |
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| T |
45179856 |
tgttgcgtagtggggttgatcgattcaaccgacagtttgcacatcttgaggaacattatggcaaaggcggacgaagttcaccattgcagagacagcatgc |
45179757 |
T |
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| Q |
120 |
ctccttacctaagtaaaatgtttgtcaatatttgatcctttgagcagtttctacccttagcagt |
183 |
Q |
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| T |
45179756 |
ctccttacctaagt-aaatgtttgtcaatatttgatcctttgagcagtttctacccttagcagt |
45179694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 45173045 - 45172889
Alignment:
| Q |
27 |
tagtggggttgattgattcaaccgacagtttgcacatcttgaggaacattatggc---aaaggcggacgaagttcaccattgcagagacagcatgcctcc |
123 |
Q |
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| T |
45173045 |
tagtggggttgatcgattcaagcgacagtttgcacatcttgaggaacattatggcaaaaaaggcgaacgaatctcaccactgcagagacagcatgcatcc |
45172946 |
T |
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| Q |
124 |
ttacctaagtaaaatgtttgtcaatatttgatcctttgagcagtttctacccttagca |
181 |
Q |
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| T |
45172945 |
ttacctcggt-aagtgtttgtcaatattttattctctgagcagtttctagccttagca |
45172889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 29958922 - 29958822
Alignment:
| Q |
28 |
agtggggttgattgattcaaccgacagtttgcacatcttgaggaacattatggcaaaggcggacgaagttcaccattgcagagacagcatgcctccttac |
127 |
Q |
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|||||||||||| | ||||| |||||||||||||||||||| || ||||||| ||||| | |||| | || ||||||| |||||| ||||||||||||| |
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| T |
29958922 |
agtggggttgatcggttcaaacgacagtttgcacatcttgaagacaattatgggaaaggtgaacgaggctctccattgctgagacaacatgcctccttac |
29958823 |
T |
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| Q |
128 |
c |
128 |
Q |
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| |
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| T |
29958822 |
c |
29958822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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