View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_4 (Length: 676)
Name: NF11309A_low_4
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 36 - 649
Target Start/End: Original strand, 44797374 - 44797988
Alignment:
| Q |
36 |
aaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccggggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcatga |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44797374 |
aaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtggga---ggggcaagacacaggcatgctgttctgaaatatcaaaatgtcaagcatga |
44797470 |
T |
|
| Q |
136 |
acatattcaggacaggacacacactaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaagggg- |
234 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44797471 |
acatattcaggacaggacgcacgctaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggg |
44797570 |
T |
|
| Q |
235 |
---ggtggaaagcattgctatgtatgaaataattcgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgataagattaaaataaattacc |
331 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44797571 |
gggggtggaaagcattgctatgtatcaaataatttgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgataagattaaaataaattacc |
44797670 |
T |
|
| Q |
332 |
aagtactggtcccttccatcctgattataataaccttttttaaatccaactctctttttccatatccaaacacccgggcttcgaaagttgcatattccac |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44797671 |
aagtactggtcccttccatcctgattataataaccttttttaaatccaactctctttttccaaatccaaacacccgggcttcgaaagttgcatattccac |
44797770 |
T |
|
| Q |
432 |
atcagcattgctggcttgaaaggtgataccgtaaaggaaaccgttaacaaatcgcgaagtaaacgtatcaacaacgaccaattggtagtggttctgagtt |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44797771 |
gtcagcattgctggcttgaaaggtgataccgtaaaggaaaccgttaacatatcgcgaagtaaacgtatcaacaacgaccaattggtagtggttctgagtt |
44797870 |
T |
|
| Q |
532 |
tgtgaattataatcccgtattgccaaagtggcacatttggttatcctatcctttttggtaggatctttgatctcattaaaatctgatagaaaagtagaga |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44797871 |
tgtgaattataatcccgtattgccaaagtggcacatttggttatcctatcctttttggtaggatctttgatctcattaaaatctgatagaaaagtagaga |
44797970 |
T |
|
| Q |
632 |
aaggaaaaatgaatcata |
649 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
44797971 |
aaggaaaaattaatcata |
44797988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 38 - 648
Target Start/End: Complemental strand, 35162734 - 35162127
Alignment:
| Q |
38 |
aaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccggggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcatgaac |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35162734 |
aaagcaaagcaaagctaaaattacaatgtaagcaaattagtggga---ggggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcatgaac |
35162638 |
T |
|
| Q |
138 |
atattcaggacaggacacacactaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggggt |
237 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35162637 |
atattcaggacaggacgcacgctaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggagt |
35162538 |
T |
|
| Q |
238 |
ggaaagcattgctatgtatgaaataattcgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtac |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35162537 |
ggaaagcattgctatgtatgaaataatttgagatgcaaagaaacattttgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtac |
35162438 |
T |
|
| Q |
338 |
tggtcccttccatcctgattataataaccttttttaaatccaactctctttttccatatccaaacacccgggcttcgaaagttgcatattccacatcagc |
437 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
35162437 |
tggtccctttgatcctgattctaataacctttcttaaatcgaactctctttttccatatccaaacactatggcttcgaaagttgcatattccttgtcagc |
35162338 |
T |
|
| Q |
438 |
attgctggcttgaaaggtgataccgtaaaggaaaccgttaacaaatcgcgaagtaaacgtatcaacaacgaccaattggtagtggttctgagtttgtgaa |
537 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35162337 |
attgctggcttgaaaggtgatacagtaaaggaaaccattaacaaattgtgaagtaaacgtatcaacaacgaccaattggtagtcgttctgagtttgtgaa |
35162238 |
T |
|
| Q |
538 |
ttataatcccgtattgccaaagtggcacatttggttatcctatcctttttggtaggatctttgatctcattaaaatctgatagaaaagtagagaaaggaa |
637 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35162237 |
ttataatcccgtattgccaaagtggcacatttggttatcctatcctttttggtaggatctttgatatcattaaaatctgatagaaaagtagagaaaggaa |
35162138 |
T |
|
| Q |
638 |
aaatgaatcat |
648 |
Q |
| |
|
|||| |||||| |
|
|
| T |
35162137 |
aaattaatcat |
35162127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 36 - 586
Target Start/End: Complemental strand, 39845967 - 39845404
Alignment:
| Q |
36 |
aaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccg--gggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcat |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39845967 |
aaaaagcaaagcaaagctaaaattacaatgtaatcaaattagtgggaggggcagggcatgacacaggcatgctgttcagaaatatcaaaatgtcaagcat |
39845868 |
T |
|
| Q |
134 |
gaacatattcaggacaggacacacactaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggg |
233 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39845867 |
gaacatattcaggacaggacgcacgctaaacgtggcaaattaaaa-ccccaaatgacaagctgcgaaaaaatgaggctaaacatgtggtatggtaaaggg |
39845769 |
T |
|
| Q |
234 |
gggtggaaagcattgct---atgtatgaaataattcgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgataagattaaaataaattac |
330 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39845768 |
gggtggaaagcattgctgctatgtatgaaataatttcagatgcaaagaaacatattgaaaaaatgacaaacaatctggtgataagattaaaataaattac |
39845669 |
T |
|
| Q |
331 |
caagtactggtcccttccatcctgattataataacctttttta---------aatccaactctctttttccatatccaaacacccgggcttcgaaagttg |
421 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||| | | |||| | |||||||||||| ||||| |||| ||||||| ||||||| |
|
|
| T |
39845668 |
caagtactggtcccttccatcctgattctaaaaaactttctgagattcaaataatcataatctctttttccaaatccatacacatgggcttcaaaagttg |
39845569 |
T |
|
| Q |
422 |
catattccacatcagcattgctggcttgaaaggtgataccgtaaaggaaaccgttaacaaatcgcgaagtaaacgtatcaacaacgaccaattggtagtg |
521 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||| ||||||||||| ||||| | | ||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
39845568 |
catattccttgtcagcattcatggcttgaaatgtgatacggtaaaggaaacaattaaccatttgcgaaataaactcatcattaacgaccaattggtagtc |
39845469 |
T |
|
| Q |
522 |
gttctgagtttgtgaattataatcccgtattgccaaagtggcacatttggttatcctatcctttt |
586 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||| |
|
|
| T |
39845468 |
gttccgagtttgtgaattataatcccgtattgccaaagtgacacatttgataagcctatcctttt |
39845404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 369
Target Start/End: Complemental strand, 39841018 - 39840663
Alignment:
| Q |
14 |
gaatgtgatgataatgtttttaaaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccggggcatgacacaggcatgctgttctga |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39841018 |
gaatgtgctgataatgtttttaaaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccggggcatgacacaggcatgctgttctga |
39840919 |
T |
|
| Q |
114 |
aatatcaaaatgtcaagcatgaacatattcaggacaggacacacactaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840918 |
aatatcaaaatgtcaagcatgaacatattcagaacaggacgcacgctaaacatggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaa |
39840819 |
T |
|
| Q |
214 |
acatatggtatggtaaaggggggtggaaagcattgctatgtatgaaataattcgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgata |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
39840818 |
acatatggtatggtaaagggggatggaaagcattgctagctgtgaaataatttgagatgcaaagaaaaatattgaaaaaatgacaaacaatctggtgata |
39840719 |
T |
|
| Q |
314 |
agattaaaataaattaccaagtactggtcccttccatcctgattataataaccttt |
369 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |||| |||||||||| |
|
|
| T |
39840718 |
agattaaaataaattaccaagtgctggtccctttgatcccgatttgaataaccttt |
39840663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 408 - 648
Target Start/End: Complemental strand, 39840618 - 39840378
Alignment:
| Q |
408 |
ggcttcgaaagttgcatattccacatcagcattgctggcttgaaaggtgataccgtaaaggaaaccgttaacaaatcgcgaagtaaacgtatcaacaacg |
507 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||| ||||| | | ||||| ||||| ||||| |||| |
|
|
| T |
39840618 |
ggcttcgaaagttgcatattccttgtcagcattcatggcttgaaatgtgataatgtaaaggaaaccattaaccatttgcgaaataaactcatcaataacg |
39840519 |
T |
|
| Q |
508 |
accaattggtagtggttctgagtttgtgaattataatcccgtattgccaaagtggcacatttggttatcctatcctttttggtaggatctttgatctcat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
39840518 |
accaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtggcacatttggttatcctatccttttcgataggatctttgatctcat |
39840419 |
T |
|
| Q |
608 |
taaaatctgatagaaaagtagagaaaggaaaaatgaatcat |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
39840418 |
taaaatctgatagaaaagtagagaaaggaacaattaatcat |
39840378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 467 - 649
Target Start/End: Original strand, 44630826 - 44631008
Alignment:
| Q |
467 |
ggaaaccgttaacaaatcgcgaagtaaacgtatcaacaacgaccaattggtagtggttctgagtttgtgaattataatcccgtattgccaaagtggcaca |
566 |
Q |
| |
|
||||||| ||||| | | ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44630826 |
ggaaaccattaaccatttgcgaaataaactcatcattaacgaccaattggtagtggttctgagtttgtgaattataatcccgtattgccaaagtggcaca |
44630925 |
T |
|
| Q |
567 |
tttggttatcctatcctttttggtaggatctttgatctcattaaaatctgatagaaaagtagagaaaggaaaaatgaatcata |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44630926 |
tttggttatcctatcctttttggtaggatctttgatctcattaaaatctgatagaaaagtagagaaaggaaaaattaatcata |
44631008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 606 - 648
Target Start/End: Complemental strand, 39845372 - 39845330
Alignment:
| Q |
606 |
attaaaatctgatagaaaagtagagaaaggaaaaatgaatcat |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
39845372 |
attaaaatctgatagaaaagtagagaaaggaacaattaatcat |
39845330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 31696611 - 31696721
Alignment:
| Q |
187 |
tgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggggtggaaagcattgctatgtatgaaataattcgagatgcaaagaaacatatt |
286 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| | | || ||| |||||| |||||||||||| | ||||| ||||||| ||||||||||| |
|
|
| T |
31696611 |
tgacaacctacaaaaaaatgaggctaaacatattgcaggg------gggttggaaaccattgctatgtaag---taatttcagatgcagagaaacatatt |
31696701 |
T |
|
| Q |
287 |
gaaaaaatgagaaacaatct |
306 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
31696702 |
ggaaaaatgacaaacaatct |
31696721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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