View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_43 (Length: 403)
Name: NF11309A_low_43
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 153 - 397
Target Start/End: Original strand, 43564144 - 43564388
Alignment:
| Q |
153 |
tccgcacattgtaagcgagagggtgtgaaaagagaagatgatcactactttcttctgcagcatagcagaacacgcagggattatcggcattatctgctaa |
252 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564144 |
tccgcacattgtaagcgaaagggcgtgaaaagagaagatgatcactactttcttctgcagcatagcagaacacgcagggattatcggcattatctgctaa |
43564243 |
T |
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| Q |
253 |
gacaccccttgctttcagagcacccttcgtcatgattctgtcctgcaatactcttccatctaaaaaccgtgaatttcaatggaaccaaatcgctccacaa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
43564244 |
gacaccccttgctttcagagcacccttcgtcatgattctgtcctgcaatactcttccatctaaaaaccgtgaatttaaatggaaccaaactgctccacaa |
43564343 |
T |
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| Q |
353 |
aaactttgaaagctctcaacaattctgcagaaacagaattatgct |
397 |
Q |
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|||| |||||||| || |||||||||||||||||||||||||||| |
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| T |
43564344 |
aaaccttgaaagcccttaacaattctgcagaaacagaattatgct |
43564388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 156 - 397
Target Start/End: Complemental strand, 43476146 - 43475905
Alignment:
| Q |
156 |
gcacattgtaagcgagagggtgtgaaaagagaagatgatcactactttcttctgcagcatagcagaacacgcagggattatcggcattatctgctaagac |
255 |
Q |
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||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |
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| T |
43476146 |
gcacattgtaagcgaaagggcgtgaaaagagaatatgatcactactttcttctgcagcatagcagaacacgcagggattatcgacattatatgcttagac |
43476047 |
T |
|
| Q |
256 |
accccttgctttcagagcacccttcgtcatgattctgtcctgcaatactcttccatctaaaaaccgtgaatttcaatggaaccaaatcgctccacaaaaa |
355 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
43476046 |
accccttgctttcagagcacccatcgtcatgattatgtcctgcaatactcttccatctaaaaaccgtgaatttcaatggaaccaaaccgctccacagaaa |
43475947 |
T |
|
| Q |
356 |
ctttgaaagctctcaacaattctgcagaaacagaattatgct |
397 |
Q |
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| T |
43475946 |
ctttgaaagccctcaacaattctgcagaaacagaattatgct |
43475905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 29847137 - 29847279
Alignment:
| Q |
20 |
caataattatcctaatttctccaaaaacgaatctcatttgtccctaaaccttaacaaccaaaaagtttcctaatatatcacaacacaacccaacacaact |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29847137 |
caataattatcctaatttctccaaaaacgaatctcatttgtccctaaaccttaacaaccaaaaagtttcctaatatatcacaacacaacacaacacaact |
29847236 |
T |
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| Q |
120 |
catcacactcactccaaagcacttgcttccatttccgcacatt |
162 |
Q |
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| T |
29847237 |
catcacactcactccaaagcacttgcttccatttccacacatt |
29847279 |
T |
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