View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_44 (Length: 398)
Name: NF11309A_low_44
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 45141604 - 45141971
Alignment:
| Q |
13 |
aatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctgaatgaatttgacaacaccat |
112 |
Q |
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| T |
45141604 |
aatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctgaatgaatttgacaacaccat |
45141703 |
T |
|
| Q |
113 |
ggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgta |
212 |
Q |
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| T |
45141704 |
ggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgta |
45141803 |
T |
|
| Q |
213 |
gctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacg |
312 |
Q |
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| T |
45141804 |
gctgcctctgttgctggaaatcgtggccatgattatgttacatccaaacatggtctcttaggacttgtacgttcaacgtgtggtgagcttggagcttacg |
45141903 |
T |
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| Q |
313 |
gaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaatatg |
380 |
Q |
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| T |
45141904 |
gaattagagtcaattcaatctcaccgtatggtgttgccacgcctcttgcatgtagagcactgaatatg |
45141971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 45152247 - 45152612
Alignment:
| Q |
13 |
aatatggaaccctagacattatgtttagcaacgctggaattgaaggtggta------tgtctagcagcatactagaatttgatctgaatgaatttgacaa |
106 |
Q |
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| T |
45152247 |
aatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgctatgtctatcagcatactaa----tgatgtaaatgaatttgacaa |
45152342 |
T |
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| Q |
107 |
caccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgcc |
206 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||| |||||||| ||||||||||||||||| || || |
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| T |
45152343 |
caccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtggaaagaaaaattcgtggatccataatttgcacggct |
45152442 |
T |
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| Q |
207 |
agtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggag |
306 |
Q |
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| T |
45152443 |
agtgtggctggctttgttgctggatgtgcaggacatgattatacaacatccaaacatggtcttataggccttgttcgctcaacgtgcagtgagcttggag |
45152542 |
T |
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| Q |
307 |
cttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaa |
376 |
Q |
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| T |
45152543 |
cttatggaataagagttaattcaatttcaccttctggtgttgccacacctcttttatgtagagcactgaa |
45152612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 72 - 374
Target Start/End: Original strand, 38256127 - 38256429
Alignment:
| Q |
72 |
agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg |
171 |
Q |
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||||||||||||||| | || ||||||||||||||||||||||| | || ||||||| || ||| |||||||||| ||| ||||| | ||||||| |
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| T |
38256127 |
agcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtgg |
38256226 |
T |
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| Q |
172 |
agagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctctt |
271 |
Q |
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| |||||||| || ||||| |||||||| || ||||||||||||| | ||||| | | | | || ||||||||| | || ||||||||||| | |
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| T |
38256227 |
aaagaaaaatacgaggatcaataatttgcacagccagtgtagctggttttgttggtagatgtgcaggacatgattatacagcatcaaaacatggtcttat |
38256326 |
T |
|
| Q |
272 |
aggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagca |
371 |
Q |
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||| ||||| | ||| | |||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||| || |||||||||||||||||| |
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| T |
38256327 |
aggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctcttgcatgtagagca |
38256426 |
T |
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| Q |
372 |
ctg |
374 |
Q |
| |
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||| |
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| T |
38256427 |
ctg |
38256429 |
T |
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