View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_49 (Length: 388)
Name: NF11309A_low_49
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_49 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 36727801 - 36728176
Alignment:
| Q |
13 |
gaaccacaaatggtagctccaaatttagacccccaccaagtccaagatcactaccaataataggccaccttcaccatataggctcagtcataccaaaatc |
112 |
Q |
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| T |
36727801 |
gaaccacaaatggtagctccaaatttagacccccaccaagtccaagatcactaccaataataggccaccttcaccatataggctcagtcataccaaaatc |
36727900 |
T |
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| Q |
113 |
attccaaacactttctcaccaatatggtcccttaattcagctcaatcttggtgcatcaacttctatagttgtctccaatgcacaagttgccaaacaagtc |
212 |
Q |
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| T |
36727901 |
attccaaacactttctcaccaatatggtcccttaattcagctcaatctaggtgcatcaacttctatagttgtctccaatgcacaagttgccaaacaagtc |
36728000 |
T |
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| Q |
213 |
atgaaaacatatgaccttaattttagctaccgaccccaatttggatcctctcatgattacttatacaaagggtcttatttcatcactgccccatatggtc |
312 |
Q |
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| T |
36728001 |
atgaaaacacatgaccttaattttagctaccgaccccaatttggatcctctcatgattacttatacaaagggtcttatttcatcactgccccatatggtc |
36728100 |
T |
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| Q |
313 |
catattggagattcatgnnnnnnntatgcgttactaaattactctctagctctcaacttggtcgcttcatgcatat |
388 |
Q |
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| T |
36728101 |
catattggagattcatgaaaaaaatatgcgttactaaattactctctagctctcaacttggtcgcttcatgcatat |
36728176 |
T |
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