View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_5 (Length: 649)

Name: NF11309A_low_5
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_5
NF11309A_low_5
[»] chr7 (16 HSPs)
chr7 (14-490)||(25084215-25084690)
chr7 (12-217)||(25071307-25071512)
chr7 (12-235)||(25062604-25062830)
chr7 (556-649)||(25084886-25084979)
chr7 (12-164)||(25090505-25090657)
chr7 (530-649)||(25073237-25073356)
chr7 (571-649)||(25063700-25063778)
chr7 (253-380)||(25062821-25062948)
chr7 (253-381)||(25090716-25090844)
chr7 (256-377)||(25071524-25071645)
chr7 (12-97)||(25058394-25058479)
chr7 (495-576)||(25090888-25090969)
chr7 (13-123)||(25094687-25094797)
chr7 (589-649)||(25058949-25059009)
chr7 (418-481)||(25071701-25071764)
chr7 (589-636)||(25090968-25091015)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Original strand, 25084215 - 25084690
Alignment:
Q  14 gaaacaaacatctctccaatcatctcttttctgaattgcagaccacaaatcaatggcctttattttcatctcacgacacatattcaaacacgcttctgaa 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25084215 gaaacaaacatctctccaatcatctattttctgaattgcagaccacaaatcaatggcctttattttcatctcacgacacatattcaaacacgcttctgaa 25084314  T
Q  114 tatattcgacttgtttcatttgttctcattggattcccaaagtcatcactgagatcattcaaacaatttgttagtaaagatatgtcatagaataattagg 213  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  25084315 tatattcgacttgtttcatttgttctcattgggttcccaaagtcatcactgagcttattcaaacaatttgttagtaaagatatgtcatagaataattagg 25084414  T
Q  214 aaataataatgtcaaagattatacannnnnnnaagggaacaaaggttattacatgttgatcttgatttgtgcctcattgatgggaggattactgagaaat 313  Q
    |||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25084415 aaataataatgtcaaagattatacatttttttaagggaa-aaaggttattacatgttgatcttgatttgtgcctcattgatgggaggattactgagcaat 25084513  T
Q  314 ataattcgagtcttgtctgatagactctgccaatcattacgaattatgtcaaaattgacattcataaatattttttaaacagcaaaaacaaaattaacat 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  25084514 ataattcgagtcttgtctgatagactctgccaatcattacgaattatgtcaaaattgacattcataaatattttttgaatagtaaaaacaaaattaacat 25084613  T
Q  414 tgataaatatgagatgaaaactaaatttcatacacaaatgacacaagaatttcataaagtatgaaacacaattatta 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25084614 tgataaatatgagatgaaaactaaatttcatacacaaatgacacaagaatttcataaagtatgaaacacaattatta 25084690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 25071307 - 25071512
Alignment:
Q  12 atgaaacaaacatctctccaatcatctcttttctgaattgcagaccacaaatcaatggcctttattttcatctcacgacacatattcaaacacgcttctg 111  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||| |||||| | ||||||||||||||    
T  25071307 atgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacgtatcaatggccttgattttcatctcacaacacatgtccaaacacgcttctg 25071406  T
Q  112 aatatattcgacttgtttcatttgttctcattggattcccaaagtcatcactgagatcattcaaacaatttgttagtaaagatatgtcatagaataatta 211  Q
    ||||||||||||||  |||||||||||| ||||| | |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||    
T  25071407 aatatattcgacttacttcatttgttcttattggttgcccaaaatcatcactgagctcattcaaacaatttgttagtattgatatatcatagaataatta 25071506  T
Q  212 ggaaat 217  Q
    ||||||    
T  25071507 ggaaat 25071512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 25062604 - 25062830
Alignment:
Q  12 atgaaacaaacatctctccaatcatctcttttctgaattgcagaccacaaatcaatggcctttattttcatctcacgacacatattcaaacacgcttctg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||| || || |    
T  25062604 atgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcatctcacgacacatatccaaacatgcatcgg 25062703  T
Q  112 aatatattcgacttgtttcatttgttctcattggattcccaaagtcatcactgagatcattcaaacaatttgttagtaaagatatgtca---tagaataa 208  Q
    ||||||||| ||    |||||||||||| ||||| | |||||| |||| |||| | |||||||||||||||||||| ||  |||| |||   ||||||||    
T  25062704 aatatattccacaatcttcatttgttcttattggttgcccaaattcattactgggctcattcaaacaatttgttagaaagtatatatcatcgtagaataa 25062803  T
Q  209 ttaggaaataataatgtcaaagattat 235  Q
    ||||||||| | ||| |||||| ||||    
T  25062804 ttaggaaatgagaatatcaaaggttat 25062830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 556 - 649
Target Start/End: Original strand, 25084886 - 25084979
Alignment:
Q  556 caaaataagaatacccttttaccattatatggatagcaatcttcctcatattttctacgtattcctccaatggtacatgaggaccaagaccact 649  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25084886 caaaataacaatacccttttaccattatatggatagcaatcttcctcatattttctacgtattcctccaatggtacatgaggaccaagaccact 25084979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 25090505 - 25090657
Alignment:
Q  12 atgaaacaaacatctctccaatcatctcttttctgaattgcagaccacaaatcaatggcctttattttcatctcacgacacatattcaaacacgcttctg 111  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| || |||||| ||||||     
T  25090505 atgaaacaaacatctttccaatcatctcttttctaaattgcagaccacatatcaatgacctttattttcatctcacgacacaaatccaaacatgcttcta 25090604  T
Q  112 aatatattcgacttgtttcatttgttctcattggattcccaaagtcatcactg 164  Q
    ||||||||||||    ||||||||| |||| ||| | |||||| |||||||||    
T  25090605 aatatattcgacaatcttcatttgtcctcaatggttgcccaaattcatcactg 25090657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 530 - 649
Target Start/End: Original strand, 25073237 - 25073356
Alignment:
Q  530 tttaaatttacgtcgaaatttgaaatcaaaataagaatacccttttaccattatatggatagcaatcttcctcatattttctacgtattcctccaatggt 629  Q
    ||||||| || ||||| |||||||||||| |||| ||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||    
T  25073237 tttaaatatatgtcgatatttgaaatcaagataacaatactcttttaccattatatgggtagcaatcttcttcatattttctatgtattcccccaatggt 25073336  T
Q  630 acatgaggaccaagaccact 649  Q
    ||||||||||||||||||||    
T  25073337 acatgaggaccaagaccact 25073356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 571 - 649
Target Start/End: Original strand, 25063700 - 25063778
Alignment:
Q  571 cttttaccattatatggatagcaatcttcctcatattttctacgtattcctccaatggtacatgaggaccaagaccact 649  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25063700 cttttaccattatatggatagcaatcttcctcatattttctatgtattcctccaatggtacatgaggaccaagaccact 25063778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 253 - 380
Target Start/End: Original strand, 25062821 - 25062948
Alignment:
Q  253 caaaggttattacatgttgat-cttgatttgtgcctcattgatgggaggattactgagaaatataattcgagtcttgtctgatagactctgccaatcatt 351  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || | |||||| ||||| |||| |||    
T  25062821 caaaggttattacatgt-gatgcttcatttgtgcctcattgattggaggattactgagaaatataatacgagttttctgtgataggctctgtcaattatt 25062919  T
Q  352 acgaattatgtcaaaattgacattcataa 380  Q
    | |||||||||||||||| ||||||||||    
T  25062920 aggaattatgtcaaaattaacattcataa 25062948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 253 - 381
Target Start/End: Original strand, 25090716 - 25090844
Alignment:
Q  253 caaaggttattacatgttgatcttgatttgtgcctcattgatgggaggattactgagaaatataattcgagtcttgtctgatagactctgccaatcatta 352  Q
    |||| ||||||||||||||| ||| | |||||||||| ||||||||||| |||||||||||||||| ||| |||||| ||| || |||||  ||| ||||    
T  25090716 caaaagttattacatgttgaactttaattgtgcctcactgatgggaggactactgagaaatataatccgaatcttgtgtgacaggctctgttaattatta 25090815  T
Q  353 cgaattatgtcaaaattgacattcataaa 381  Q
    | ||||||||||| ||| |||||||||||    
T  25090816 caaattatgtcaagattaacattcataaa 25090844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 256 - 377
Target Start/End: Original strand, 25071524 - 25071645
Alignment:
Q  256 aggttattacatgttgatcttgatttgtgcctcattgatgggaggattactgagaaatataattcgagtcttgtctgatagactctgccaatcattacga 355  Q
    ||||||||||||||||  ||| ||||||||||||||||| |||||||||||||||| |||||| ||||| || | ||| || ||||  | ||||||| ||    
T  25071524 aggttattacatgttgtgcttcatttgtgcctcattgattggaggattactgagaagtataatccgagttttctgtgacaggctctatccatcattagga 25071623  T
Q  356 attatgtcaaaattgacattca 377  Q
    |||||||| ||||| |||||||    
T  25071624 attatgtcgaaattaacattca 25071645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 25058394 - 25058479
Alignment:
Q  12 atgaaacaaacatctctccaatcatctcttttctgaattgcagaccacaaatcaatggcctttattttcatctcacgacacatatt 97  Q
    ||||||||||| ||| |||||||||||||| ||||||||  ||||||||||||||||||||| || ||||| | || |||||||||    
T  25058394 atgaaacaaacttctttccaatcatctcttctctgaattaaagaccacaaatcaatggccttgatgttcatatgactacacatatt 25058479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 495 - 576
Target Start/End: Original strand, 25090888 - 25090969
Alignment:
Q  495 aacataatttaccactaatttcaaccgtgttaaagtttaaatttacgtcgaaatttgaaatcaaaataagaataccctttta 576  Q
    ||||||||| ||||   ||||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  25090888 aacataattaaccatgtatttcaactatgttaaagtttaaatttatgtcgaaatttgaaatcaaaataacaatactctttta 25090969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 25094687 - 25094797
Alignment:
Q  13 tgaaacaaacatctctccaatcatctcttttctgaattgcagaccacaaatcaatggcctttattttcatctcacgacacatattcaaacacgcttctga 112  Q
    |||| ||||||| || ||| | ||| ||||| || ||||||||||||| |||||||||||| || |||||||| || || |  | |||||| ||||||||    
T  25094687 tgaagcaaacatttcgccagttatcccttttttggattgcagaccacagatcaatggccttgatattcatctcgcggcaaagttccaaacatgcttctga 25094786  T
Q  113 atatattcgac 123  Q
    |||||||||||    
T  25094787 atatattcgac 25094797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 649
Target Start/End: Original strand, 25058949 - 25059009
Alignment:
Q  589 tagcaatcttcctcatattttctacgtattcctccaatggtacatgaggaccaagaccact 649  Q
    |||||||||| | ||||||||  | ||||||||||||| ||||||||||||| ||||||||    
T  25058949 tagcaatcttacacatattttgaatgtattcctccaatcgtacatgaggaccgagaccact 25059009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 25071701 - 25071764
Alignment:
Q  418 aaatatgagatgaaaactaaatttcatacacaaatgacacaagaatttcataaagtatgaaaca 481  Q
    |||||| ||| ||||||| ||||| |||||||||  ||||||||||||||| ||||| ||||||    
T  25071701 aaatatcagacgaaaacttaattttatacacaaagtacacaagaatttcatgaagtaggaaaca 25071764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 589 - 636
Target Start/End: Original strand, 25090968 - 25091015
Alignment:
Q  589 tagcaatcttcctcatattttctacgtattcctccaatggtacatgag 636  Q
    |||||||||||||||||||||| |  ||||| ||||||||||||||||    
T  25090968 tagcaatcttcctcatattttcaatatattcttccaatggtacatgag 25091015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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