View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_56 (Length: 380)
Name: NF11309A_low_56
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 41521531 - 41521884
Alignment:
| Q |
1 |
taggtttcaaaatgggagaccttaccttcttttttctatggtggtgaatgcatgaacggttgaagaaggtaatgacctccaactgcaagaagttttgttt |
100 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41521531 |
taggtttcaaaatgggacaccttactttcttttttctatggtggtgaatgcatgaacggttgaagaaggtaatgacctccaactgcaagaagttttgttt |
41521630 |
T |
|
| Q |
101 |
aactttgataattacatgaannnnnnnatcagatttcttttgttgaaagacagatcgccaataaatcctgatcattagatatcatgtacatgtatattac |
200 |
Q |
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||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41521631 |
aactttgataattgcatgaatttttttattagatttcttttgttgaaagacagatcgccaataaatcctgatcattagatatcatgtacatgtatattac |
41521730 |
T |
|
| Q |
201 |
acacaatatgttctatccttccttaataagatgcttctctagggtttttgctatttttaaaatagtgttattggaaatcacataaaactaaatttagaaa |
300 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
41521731 |
acacaatatgttatatcct----taataagatgcttctctagggtttttgctatttttaaaatagtgttaatggaaatctcataaaactaaatttagaaa |
41521826 |
T |
|
| Q |
301 |
ccgagcatgaaatgcacatctttctatccttcgcaaaatgcttggctcctcatgaaat |
358 |
Q |
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| T |
41521827 |
ccgagcatgaaatgcacatctttctatccttcgcaaaatgcttggctcctcatgaaat |
41521884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 473083 - 472716
Alignment:
| Q |
1 |
taggtttcaaaatgggagaccttaccttcttttttctatggtggtgaatgcatgaacggttgaagaaggtaatgacctccaactgcaagaag-ttttgtt |
99 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |
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| T |
473083 |
taggtttcaaaatgggagaccttactttcttttttctatggtggtgaatgcatgagcggttgaagaaggtaatgacctccaactgcaagaagtttttttt |
472984 |
T |
|
| Q |
100 |
taactttgataattacatgaannnnnnnatcagatttcttttgttgaaagacagatcgccaataaatcctgatcattagatatcatgtacatgtatatta |
199 |
Q |
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||||||||| ||||||||||| || |||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||| |
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| T |
472983 |
taactttgacaattacatgaatttttttattagatttcttttgttgaaagacaaatcgccaataaatcctaatcattggatatcgtgtacatgtatatta |
472884 |
T |
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| Q |
200 |
cacacaatatgttctatccttccttaataagatg--cttctctagggtttttgctatttttaaaatagtgttattggaaatcacataaaactaaatttag |
297 |
Q |
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|||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
472883 |
cacacaatatgttcta----tccttaataagatgtacttctcttgggtttttgctatttttaaaatagtgttattggaaatctcataaaactaaatttag |
472788 |
T |
|
| Q |
298 |
aaaccgagcatgaa-----------atgcacatctttctatccttcgcaaaatgcttggctcctcatgaaat |
358 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
472787 |
aaaccgagcatgaaatgcacaaaagatgcacatctttctattattcgcaaaatgcttggctcctcatgaaat |
472716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 1242528 - 1242147
Alignment:
| Q |
1 |
taggtttcaaaatgggagaccttaccttcttttttctatggtggtgaatgcatgaacggttgaagaaggtaatgacctccaactgcaagaagttttgttt |
100 |
Q |
| |
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|||||||||||||||||| |||| | || ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1242528 |
taggtttcaaaatgggaggccttgctttgtttttcctatggtggtgaatgcatgagccgttgaagaaggtaatgaccttcaactgcaagaagttttgttt |
1242429 |
T |
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| Q |
101 |
aactttgataattacatgaannnnnnnatcagatttcttttgttgaaagacagatcgccaataaatcctgatcattag-atatcatgtacatgtatatta |
199 |
Q |
| |
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||||||||||||| |||||| || |||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||| |
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| T |
1242428 |
aactttgataattgcatgaatttttttattagatttcttttgttgaaagacaaatcgccaataagtcctgatcatttggatatcatgtacatgtatatta |
1242329 |
T |
|
| Q |
200 |
cacacaatatgttctatccttccttaataagatgcttctctagggtttttgctatttttaaaatagtgttattggaaatcacataaaactaaatttagaa |
299 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1242328 |
cacacaatttgttctatcctt----aataagatgcttctctagggtttttgctatttttaaaatagtgttattggaaatctcataaaactaaatttagaa |
1242233 |
T |
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| Q |
300 |
accgagcatgaa-----------atgcacatctttctatccttcgcaaaatgcttggctcctcatgaaatatctggcatgctttct |
374 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||| | ||||||||||||| |
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| T |
1242232 |
accgagcatgaaatacacaaaagatgcacatctttctatcctttgcaaaatgcttgggttctcatgaaatttatggcatgctttct |
1242147 |
T |
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