View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_57 (Length: 378)
Name: NF11309A_low_57
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 13085624 - 13085978
Alignment:
| Q |
16 |
tgaagattaactctctttgggacaatattacaatacaataatatgtcaatt---------aataataacttgatcatcaaaatcttatgattcacaactt |
106 |
Q |
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| T |
13085624 |
tgaagattaattctcttcgtgacaatattacaatacaataatatgtcaattgaagtgttcaataataactt--ttatcaaaatcttatgattcacaactt |
13085721 |
T |
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| Q |
107 |
agaggatatacaatgagcgaatataacaatcatatttcaacgattcaatgaactttccttttttctatatctctctaagctcacaatcatggatgttatg |
206 |
Q |
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| T |
13085722 |
agaggatataaaatgagcaaatataacaatcatatttcaacgattcaatgaactttccttttttctatatctctctaagctcacaatcatggatgttatg |
13085821 |
T |
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| Q |
207 |
tagaactatctcatgatagcataagtcataagtcaaatgatatttgattgactttggttttcttctcttgatttggtcttcaacttacagtctttgactc |
306 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13085822 |
tagaactatctcatgataccataagtcataagtcaaatgatatttgattgactttggttttcttctcttgatttggtcttcaacttacagtttttgactc |
13085921 |
T |
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| Q |
307 |
tcagctctgcgccatgacttctttggtcttgatccttttgatcaaagaccacataat |
363 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
13085922 |
tcagctctgcgccatgacttctttagtcttgatccttttgatcagagaccacataat |
13085978 |
T |
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