View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_61 (Length: 376)

Name: NF11309A_low_61
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_61
NF11309A_low_61
[»] chr3 (14 HSPs)
chr3 (163-356)||(8260709-8260902)
chr3 (163-353)||(8265675-8265866)
chr3 (163-353)||(8258602-8258796)
chr3 (14-98)||(8260560-8260644)
chr3 (169-260)||(8350129-8350220)
chr3 (28-98)||(8350006-8350076)
chr3 (163-260)||(8352867-8352964)
chr3 (39-98)||(8258478-8258537)
chr3 (39-98)||(8265551-8265610)
chr3 (57-98)||(8352761-8352802)
chr3 (43-98)||(8252867-8252922)
chr3 (169-240)||(8252975-8253046)
chr3 (24-94)||(8334002-8334073)
chr3 (165-237)||(8356436-8356508)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 163 - 356
Target Start/End: Original strand, 8260709 - 8260902
Alignment:
Q  163 atcataatcagaaacttgagatgatgagtctaaagaatggacaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 262  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 8260808  T
Q  263 gaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 356  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260809 gaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 8260902  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 163 - 353
Target Start/End: Original strand, 8265675 - 8265866
Alignment:
Q  163 atcataatcagaaacttgagatgatgagtctaaagaatggacaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 261  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8265774  T
Q  262 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttataga 353  Q
    ||||| ||||||  |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  8265775 tgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaacttgatccatttataga 8265866  T

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Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 163 - 353
Target Start/End: Original strand, 8258602 - 8258796
Alignment:
Q  163 atcataatcagaaacttgagatgatgagtctaaagaatggacaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 261  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8258701  T
Q  262 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagt---taacttgatctatttataga 353  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||||||    
T  8258702 tgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttataga 8258796  T

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Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 8260560 - 8260644
Alignment:
Q  14 gaaagtggatgcagattaacactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 98  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260560 gaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 8260644  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 8350129 - 8350220
Alignment:
Q  169 atcagaaacttgagatgatgagtctaaagaatggacaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 260  Q
    ||||||||||||||| ||||||| | ||||| |  |||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8350129 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttgcact 8350220  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 8350006 - 8350076
Alignment:
Q  28 attaacactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 98  Q
    ||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  8350006 attaacattgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctc 8350076  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 8352867 - 8352964
Alignment:
Q  163 atcataatcagaaacttgagatgatgagtctaaagaatggacaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 260  Q
    |||||||||| |||||||||| |||||||   ||||| |  |||||||| | || || ||||||||||||||||||||||||||||||  ||||||||    
T  8352867 atcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgcact 8352964  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 8258478 - 8258537
Alignment:
Q  39 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 98  Q
    |||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctc 8258537  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 8265551 - 8265610
Alignment:
Q  39 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 98  Q
    ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctc 8265610  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 8352761 - 8352802
Alignment:
Q  57 gataagagttaacagggaaataagaaactacaattggagctc 98  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352761 gataatagttaacagggaaataagaaactacaattgaagctc 8352802  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 8252867 - 8252922
Alignment:
Q  43 ctacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 98  Q
    |||||| ||||||||| ||  |||||||| ||||||||||||| ||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctc 8252922  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 8252975 - 8253046
Alignment:
Q  169 atcagaaacttgagatgatgagtctaaagaatggacaaagcaacttaagaaggatgaaatcaaagccatcaa 240  Q
    ||||||||||||||| ||||||| | ||||| |  |||| ||| | ||||| ||||||||||||||||||||    
T  8252975 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 8334002 - 8334073
Alignment:
Q  24 gcagattaacactgcatgactacaaacgtgagag-ataagagttaacagggaaataagaaactacaattgga 94  Q
    ||||||||| || || ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||    
T  8334002 gcagattaataccgcctgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattgga 8334073  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
Q  165 cataatcagaaacttgagatgatgagtctaaagaatggacaaagcaacttaagaaggatgaaatcaaagccat 237  Q
    ||||||||||||||||||||||||||| | ||||  |  |||||||| | ||||| | | |||||||||||||    
T  8356436 cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

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