View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_62 (Length: 373)
Name: NF11309A_low_62
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 46227012 - 46226667
Alignment:
| Q |
7 |
ccaatgaagtgtaagaccatgttttagttaaaaggtctaagttgaaccaacgnnnnnnnnncattctactcaaagaaaacacatgcattcttccctctaa |
106 |
Q |
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| T |
46227012 |
ccaatgaagtgtaagaccatgttttagttaaaaggtctaagttgaaccaacgaaaaaaaaacattctactcaaagaaaacacatgcattcttccctctaa |
46226913 |
T |
|
| Q |
107 |
taatttcttgcctacaattttattttgtcatccaaacaaaaccttagtgtatttttctttgttatcatcggtcataataaaggtttttgttgctagttgc |
206 |
Q |
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| T |
46226912 |
taatttcttgcctacaattttattttgtcatccaaacaaaaccttagtgtatttttctttgttatcatcggtcataataaaggtttttgttgctagttgc |
46226813 |
T |
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| Q |
207 |
tactcttgtacactacaacaatacctcatatcggttgacgtcaccttttcaggtctgctccatttttagagtcgaacacgatgaccttggaaccctttta |
306 |
Q |
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| T |
46226812 |
tactcttgtacactacaacaatacctcatatcggttgacgtcaccttttcaggtctgctccatttttagagtcgaacacgatgaccttggaaccctttta |
46226713 |
T |
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| Q |
307 |
aaaatttcatcttgaacctcttctggatggtattactggtctgcct |
352 |
Q |
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| T |
46226712 |
aaaatttcatcttgaacctcttctggatggtattactggtctgcct |
46226667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 330
Target Start/End: Complemental strand, 45435651 - 45435522
Alignment:
| Q |
202 |
gttgctactcttgtacactacaacaatacctcatatcggttgacgtcacctt-ttcaggtctgctccatttttagagtcgaacacgatgaccttggaacc |
300 |
Q |
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||||||||||| |||| |||||| |||| | |||||| ||| || ||||| ||| ||||| ||||||||| ||||||||| |||||| |||||||| |
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| T |
45435651 |
gttgctactctcctacattacaacgatactttgtatcggctgatgttaccttcttcgagtctgatccattttttgagtcgaaccagatgactttggaacc |
45435552 |
T |
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| Q |
301 |
cttttaaaaatttcatcttgaacctcttct |
330 |
Q |
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|| | |||||||||||||||| ||||| |
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| T |
45435551 |
tcttcaggaatttcatcttgaaccccttct |
45435522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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