View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_63 (Length: 373)

Name: NF11309A_low_63
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_63
NF11309A_low_63
[»] chr2 (2 HSPs)
chr2 (13-162)||(6306693-6306842)
chr2 (270-361)||(6307098-6307185)
[»] chr4 (1 HSPs)
chr4 (15-158)||(39538896-39539039)
[»] scaffold0128 (1 HSPs)
scaffold0128 (13-159)||(20627-20773)
[»] chr7 (4 HSPs)
chr7 (24-159)||(33809090-33809225)
chr7 (270-320)||(2640179-2640226)
chr7 (13-45)||(44257456-44257488)
chr7 (270-320)||(48788804-48788851)
[»] chr5 (2 HSPs)
chr5 (270-320)||(16156856-16156903)
chr5 (270-320)||(20840817-20840864)
[»] chr3 (2 HSPs)
chr3 (270-320)||(42342792-42342839)
chr3 (269-297)||(46475159-46475187)
[»] chr1 (1 HSPs)
chr1 (270-320)||(41098734-41098781)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 6306693 - 6306842
Alignment:
Q  13 gaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  6306693 gaacacatgacataattaataagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgccgtcggtgaaagaaggatttgaattag 6306792  T
Q  113 ctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggtt 162  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6306793 cgacggattcttcaggtcgagaagtgatactgaatgagtttgcttcggtt 6306842  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 6307098 - 6307185
Alignment:
Q  270 caatttttaaacgacccctaattgtaagaaatatgaaatacatattaaagctaatttaaaaatatttgaactgctcagcaaatttattgact 361  Q
    |||||||||||||||| ||||||| ||||    ||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||||    
T  6307098 caatttttaaacgaccactaattgcaaga----tgaaatacatatttaagccaatttaaaaatatttgaactgctccgccaatttattgact 6307185  T

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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 39538896 - 39539039
Alignment:
Q  15 acacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagct 114  Q
    ||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||||||||||     
T  39538896 acacatgacgtaattaacaagaagctaaacccaggtgaaaggatcgatgtgaatatctttggtggcaacgccgtcggtgaaagaaggatttgaattagcg 39538995  T
Q  115 acggattcttcaggtcgagaagtgatactgaatgagtttgcttc 158  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||    
T  39538996 acggattcttcgggtggagaagtgataccgaatgagtttgcttc 39539039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 20627 - 20773
Alignment:
Q  13 gaacacatgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattag 112  Q
    ||||||||||||||||||||||||||||||| |   | |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  20627 gaacacatgacataattaacaagaagctaaatccaagcgaaaggatcgatgtgaatatctttggtggcgatgctgtcggtgaaagaaggatttgaattag 20726  T
Q  113 ctacggattcttcaggtcgagaagtgatactgaatgagtttgcttcg 159  Q
    | ||||||||||| ||| |||||||||||| ||||||||||||||||    
T  20727 cgacggattcttcgggtggagaagtgataccgaatgagtttgcttcg 20773  T

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Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 33809090 - 33809225
Alignment:
Q  24 ataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacggattct 123  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||| ||| ||||     
T  33809090 ataattaacaagaagctaaacccaggtcaaaggatcgatgtgaatatcttttgtggcgacgccgtcggtgaaagaaggatttgaattagcgacgcattca 33809189  T
Q  124 tcaggtcgagaagtgatactgaatgagtttgcttcg 159  Q
    || |||||||||||||||| ||||||||||||||||    
T  33809190 tcgggtcgagaagtgataccgaatgagtttgcttcg 33809225  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 2640226 - 2640179
Alignment:
Q  270 caatttttaaacgacccctaattgtaagaaatatgaaatacatattaaagc 320  Q
    ||||||||||||||||||||||||||||    |||||||||||||| ||||    
T  2640226 caatttttaaacgacccctaattgtaag---gatgaaatacatatttaagc 2640179  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 44257488 - 44257456
Alignment:
Q  13 gaacacatgacataattaacaagaagctaaacc 45  Q
    ||||||||||||||||||| |||||||||||||    
T  44257488 gaacacatgacataattaataagaagctaaacc 44257456  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 48788851 - 48788804
Alignment:
Q  270 caatttttaaacgacccctaattgtaagaaatatgaaatacatattaaagc 320  Q
    |||||||||||||||||||||||| ||||   |||||||||||||| ||||    
T  48788851 caatttttaaacgacccctaattgcaaga---atgaaatacatatttaagc 48788804  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 16156903 - 16156856
Alignment:
Q  270 caatttttaaacgacccctaattgtaagaaatatgaaatacatattaaagc 320  Q
    |||||||||||||||||||||||| |||   ||||||||||||||| ||||    
T  16156903 caatttttaaacgacccctaattgcaag---tatgaaatacatatttaagc 16156856  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 20840817 - 20840864
Alignment:
Q  270 caatttttaaacgacccctaattgtaagaaatatgaaatacatattaaagc 320  Q
    ||||||||||||||||||||||||||||    |||||||||||||| ||||    
T  20840817 caatttttaaacgacccctaattgtaag---gatgaaatacatatttaagc 20840864  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 42342839 - 42342792
Alignment:
Q  270 caatttttaaacgacccctaattgtaagaaatatgaaatacatattaaagc 320  Q
    ||||||||||||||||||||||||||||    |||||||||||||| ||||    
T  42342839 caatttttaaacgacccctaattgtaag---gatgaaatacatatttaagc 42342792  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 46475159 - 46475187
Alignment:
Q  269 tcaatttttaaacgacccctaattgtaag 297  Q
    |||||||||||||||||||||||||||||    
T  46475159 tcaatttttaaacgacccctaattgtaag 46475187  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 41098781 - 41098734
Alignment:
Q  270 caatttttaaacgacccctaattgtaagaaatatgaaatacatattaaagc 320  Q
    |||||||||||||||||||||||| ||||   |||||||||||||| ||||    
T  41098781 caatttttaaacgacccctaattgcaaga---atgaaatacatatttaagc 41098734  T

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