View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_64 (Length: 369)
Name: NF11309A_low_64
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 49165749 - 49165389
Alignment:
| Q |
1 |
aatacatattccttactggtctgtaaacatcccaatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttc |
100 |
Q |
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| T |
49165749 |
aatacatattccttactggtctgtaaacatcccaatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttc |
49165650 |
T |
|
| Q |
101 |
tttcttagcttcagaatttttgaaggagcatggcctagtctgcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49165649 |
tttcttagcttcagaatttttgaaggagcatggcctagcctgcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatc |
49165550 |
T |
|
| Q |
201 |
aatttacaaataagctatgtctatttgtaaaactacaatagttgcannnnnnnnncttgattctagtgttgtcaatcgtgagtcatnnnnnnntagagga |
300 |
Q |
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| T |
49165549 |
aatttacaaataagctatgtctatttgtaaaactacaatagttgca--tttttttcttgattctagtgttgtcaatcgtgagtcataaaaaaatagagga |
49165452 |
T |
|
| Q |
301 |
ttattcaagctgcattgtagtgccactaaacaacattttgtattaaatagtgtatggtagaac |
363 |
Q |
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| T |
49165451 |
ttattcaagctgcattgtagtgccactaaacaacattttgtattaaatagtgtatggtagaac |
49165389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 43752148 - 43751932
Alignment:
| Q |
7 |
tattccttactggtctgtaaacatcccaatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttctt |
106 |
Q |
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|||| ||||| ||| ||||||||||| |||||||||| ||| ||||||||||||| ||| |||| || |||||||| |||||||| | ||||||||| |
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| T |
43752148 |
tattgcttaccggtttgtaaacatccgcatgacttgatatcactttgatagtgaaatgtggatttttcagagtggatgcgaattgatctgattctttctt |
43752049 |
T |
|
| Q |
107 |
agcttcagaatttttgaaggagcatggcctagtctgcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaattta |
206 |
Q |
| |
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| |||||||| ||||||| ||||||| |||| || ||||| | |||||||| ||||| ||||| ||||||||||||||| | | || ||||||| |
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| T |
43752048 |
aacttcagaacttttgaaagagcatgaactagcatggagtgaat---tttgagttgccttctttcctatagtatgccaacaaaagcaaaaaaacaattta |
43751952 |
T |
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| Q |
207 |
caaataagctatgtctattt |
226 |
Q |
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||||||||||| ||||||| |
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| T |
43751951 |
caaataagctacatctattt |
43751932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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