View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_68 (Length: 358)

Name: NF11309A_low_68
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_68
NF11309A_low_68
[»] chr7 (3 HSPs)
chr7 (205-340)||(11841737-11841872)
chr7 (2-94)||(11841988-11842080)
chr7 (97-169)||(11841890-11841962)
[»] chr3 (1 HSPs)
chr3 (271-340)||(19345581-19345650)
[»] scaffold0166 (1 HSPs)
scaffold0166 (208-292)||(6975-7059)
[»] chr5 (2 HSPs)
chr5 (208-292)||(24764478-24764562)
chr5 (2-64)||(24069156-24069218)
[»] scaffold0356 (1 HSPs)
scaffold0356 (4-85)||(12969-13050)
[»] chr6 (1 HSPs)
chr6 (4-89)||(15820999-15821084)
[»] chr8 (1 HSPs)
chr8 (279-339)||(25276486-25276546)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 205 - 340
Target Start/End: Complemental strand, 11841872 - 11841737
Alignment:
Q  205 atcaagatcatgataaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtacaatgattctatcttttaattagttgaacgat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  11841872 atcaagatcatgataaaaattcaaatgcaatcaatatagatttactattggagattgcttgaacagtacaatgattctatcttttaattagtctaacgat 11841773  T
Q  305 ggttttttcattcgccgacaaaggttagacctttct 340  Q
    |||||||||||||||||||||||||| |||||||||    
T  11841772 ggttttttcattcgccgacaaaggttcgacctttct 11841737  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 11842080 - 11841988
Alignment:
Q  2 gcaaacatttacctgttgaagcattacctgacattgcgatcaaagaatgaatgcgcacttttgcagaccgaatagattgcaacttagagtgga 94  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  11842080 gcaaacatttacctgttgaagcattaccagacattgcgatcaaagaatggatgcgcacttttgcagactgaatagattgcaacttagagtgga 11841988  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 11841962 - 11841890
Alignment:
Q  97 aattgtgtgaactgtgttaataactgctgccaaaaagatatctgaaaccatgcatcagataaactaattattc 169  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11841962 aattgtgtgaactgtgttaataaccgctgccaaaaagatatctgaaaccatgcatcagataaactaattattc 11841890  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 19345650 - 19345581
Alignment:
Q  271 tacaatgattctatcttttaattagttgaacgatggttttttcattcgccgacaaaggttagacctttct 340  Q
    |||||||||| |||| | |||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  19345650 tacaatgattatatcctctaattagccgaacgatggttttttcattcgccgacaaaggttcgacctttct 19345581  T

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Target: scaffold0166 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 7059 - 6975
Alignment:
Q  208 aagatcatgataaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtacaatgattctatcttttaat 292  Q
    ||||| ||||||||||||||||| | ||||||||| |||||||||||||| ||  | ||||| |||| | |||||||||||||||    
T  7059 aagatgatgataaaaattcaaattctatcaatataaatttactattagaggttattcgaacactacagtaattctatcttttaat 6975  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 24764562 - 24764478
Alignment:
Q  208 aagatcatgataaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtacaatgattctatcttttaat 292  Q
    ||||| ||||||||||||||||| | ||||||||| |||||||||||||| ||  | ||||| |||| | |||||||||||||||    
T  24764562 aagatgatgataaaaattcaaattctatcaatataaatttactattagaggttattcgaacactacagtaattctatcttttaat 24764478  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 24069218 - 24069156
Alignment:
Q  2 gcaaacatttacctgttgaagcattacctgacattgcgatcaaagaatgaatgcgcacttttg 64  Q
    ||||||||||||||||||||| ||| || ||||  || |||||||| ||||||||||||||||    
T  24069218 gcaaacatttacctgttgaagaatttccggacaaagcaatcaaagagtgaatgcgcacttttg 24069156  T

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Target: scaffold0356 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 13050 - 12969
Alignment:
Q  4 aaacatttacctgttgaagcattacctgacattgcgatcaaagaatgaatgcgcacttttgcagaccgaatagattgcaact 85  Q
    |||||||||||||| ||| |||| || |||||||| ||||||||||| |||||  ||||||||||  |||| ||||||||||    
T  13050 aaacatttacctgtcgaaacattgccggacattgcaatcaaagaatgtatgcgggcttttgcagattgaatcgattgcaact 12969  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 15821084 - 15820999
Alignment:
Q  4 aaacatttacctgttgaagcattacctgacattgcgatcaaagaatgaatgcgcacttttgcagaccgaatagattgcaacttaga 89  Q
    ||||| |||| ||| || ||||| || |||||||| |||||||| ||||||||||||||||  ||| |||| ||||||||||||||    
T  15821084 aaacaattacatgtcgaggcattgccggacattgcaatcaaagagtgaatgcgcacttttgtggactgaatggattgcaacttaga 15820999  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 25276546 - 25276486
Alignment:
Q  279 ttctatcttttaattagttgaacgatggttttttcattcgccgacaaaggttagacctttc 339  Q
    |||||| ||||||||||| ||||||||||||||||||||  ||||||| ||| | ||||||    
T  25276546 ttctatattttaattagtcgaacgatggttttttcattcctcgacaaatgttcgtcctttc 25276486  T

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