View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_76 (Length: 350)
Name: NF11309A_low_76
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_76 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 3602540 - 3602196
Alignment:
| Q |
8 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
107 |
Q |
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| T |
3602540 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtagtaaatttgaacccttattaat |
3602441 |
T |
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| Q |
108 |
a---tattgtattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgaga |
199 |
Q |
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| T |
3602440 |
aatatattgtattatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattcctaaaataggtgatagtgaga |
3602341 |
T |
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| Q |
200 |
gggcagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgt |
299 |
Q |
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| T |
3602340 |
gggcagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgt |
3602241 |
T |
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| Q |
300 |
gttagagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
344 |
Q |
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| T |
3602240 |
attagagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
3602196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 3598380 - 3598043
Alignment:
| Q |
8 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
107 |
Q |
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| T |
3598380 |
gattatacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaat |
3598281 |
T |
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| Q |
108 |
atattgtattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagaggg |
202 |
Q |
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| T |
3598280 |
atgttgtataatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattccaaaaataggtgatagtgagaggg |
3598181 |
T |
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| Q |
203 |
cagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgtt |
302 |
Q |
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| T |
3598180 |
cagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagcagtgtt |
3598081 |
T |
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| Q |
303 |
agagaaattgcaaccttatttggaaaatggcaaagtga |
340 |
Q |
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| T |
3598080 |
agagaaattgcaaccttatttggaaaatggcagagtga |
3598043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 3595155 - 3594814
Alignment:
| Q |
8 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
107 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
3595155 |
gattatacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaat |
3595056 |
T |
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| Q |
108 |
atattgtattatgtgtaagttttcattgta-agaaacaatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagaggg |
202 |
Q |
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| T |
3595055 |
atgttgtataatgtgtaagttttcattgtataaaaacaatatagttaaaaacctattaaatattttttatatattccaaaaataggtgatagtgagaggg |
3594956 |
T |
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| Q |
203 |
cagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgtt |
302 |
Q |
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| T |
3594955 |
cactgaaggctgtaaatgaaggaggaaaatttttgacaatactaccacctggaactccaccagctatcccttttgcactcacttcagatggagctgtgtt |
3594856 |
T |
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| Q |
303 |
agagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
344 |
Q |
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| T |
3594855 |
agagaaattgaaaccttacttggaaaatggcaaagtgaaacc |
3594814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 3583585 - 3583665
Alignment:
| Q |
264 |
agctatccctttcttactcacttcagatggagctgtgttagagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
344 |
Q |
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| T |
3583585 |
agctatcactttcttactcacttcagatggagcagtgttagagaaattgaaaccttacttggaaaatggcaaactgaaacc |
3583665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 12877009 - 12877079
Alignment:
| Q |
8 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagat |
78 |
Q |
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|||||||| |||||||||| |||||| || |||| |||||||||||||||| |||| ||||||||||||| |
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| T |
12877009 |
gattatacaaaggagaattttgaagacctgcctgagaagtttgatgtggtgtttgatacagtaggtaagat |
12877079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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