View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_78 (Length: 349)
Name: NF11309A_low_78
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_78 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 31201163 - 31200821
Alignment:
| Q |
9 |
gagatgaaacagataaaagaagtttgcatccatcaatataatacctgaataattcgtatag---aggctttaggttggcagtcaattccttgtttctcga |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201163 |
gagaagaaacagataaaagaagtttgcatccatcaatataatacctgaataattcgtatagtagaggctttaggttggcagtcaattccttgtttctcga |
31201064 |
T |
|
| Q |
106 |
gtttttccaatgtagtaacatcgacatgctcaatttcaaacgttaccattacaaacaacgcgcacacacattatttcaattaagtgatacagacataaag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201063 |
gtttttccaatgtagtaacatcgacatgctcaatttcaaacgttaccattacaaacaacgcgcgcacacattatttcaattaagtgatacagacataaag |
31200964 |
T |
|
| Q |
206 |
agaatatgagtcaataaatgacatgattcgaagtaacttgaatgaacctctttgcaaattcctgtactgtggcgatgtcatcaaagcttccaaccatgtg |
305 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200963 |
agaatatgagtcaacaaatgacatgattcgaagtaacttgaatgaacctctttgcaaattcctgtactgtggcgatgtcatcaaagcttccaaccatgtg |
31200864 |
T |
|
| Q |
306 |
ataacatcccgattagcagcttgacaaagcatacgacccaattg |
349 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31200863 |
ataacat-ccgattcgcagcttgacaaagcatacgacccaattg |
31200821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 168 - 307
Target Start/End: Original strand, 35857028 - 35857168
Alignment:
| Q |
168 |
cacacacattatttcaattaagtgatacagacata----aagagaatatgagtcaataaatgacatgattcgaagtaacttgaatgaacctctttgcaaa |
263 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |||| ||||||| |||| ||||||||||||||| |
|
|
| T |
35857028 |
cacacacattatttcaattaagtgatacatacatacataaagagaatatgagt---taaatgacataattcaaagtaacatgaacgaacctctttgcaaa |
35857124 |
T |
|
| Q |
264 |
ttcctgtactgtggcgatgtcatcaaagcttccaaccatgtgat |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35857125 |
ttcctgtactgtggcgctgtcatcaaagcttccaaccatgtgat |
35857168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 35856870 - 35856981
Alignment:
| Q |
42 |
caatataatacctgaataattcgtatag---aggctttaggttggcagtcaattccttgtttctcgagtttttccaatgtagtaacatcgacatgctcaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
35856870 |
caatataatacctgaataattcgtatagtagaggctttaggttggcagtcaacaccttgtttctcaagtttttccaatgtagtaacatcgacgtgctcaa |
35856969 |
T |
|
| Q |
139 |
tttcaaacgtta |
150 |
Q |
| |
|
||||||| |||| |
|
|
| T |
35856970 |
tttcaaatgtta |
35856981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University