View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_8 (Length: 548)
Name: NF11309A_low_8
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 42788952 - 42789485
Alignment:
| Q |
1 |
ttcaaaagtggactcaatttcatccaacaaaacaaaccggcattccctttcagacactcaattccaacactgttcaaacctgcaattatcatttcatatc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
42788952 |
ttcaaaagtggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatc |
42789051 |
T |
|
| Q |
101 |
tcttcttcaatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42789052 |
tcttcttcaatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaa |
42789151 |
T |
|
| Q |
201 |
ggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42789152 |
ggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagaga |
42789251 |
T |
|
| Q |
301 |
ctataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagt |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42789252 |
ctatagacaatgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagt |
42789351 |
T |
|
| Q |
401 |
agatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgggtttgaagg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42789352 |
agatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagg |
42789451 |
T |
|
| Q |
501 |
gtttgtgatcagcactccactcactttcatgttc |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42789452 |
gtttgtgatcagcactccactcactttcatgttc |
42789485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 42798490 - 42799023
Alignment:
| Q |
1 |
ttcaaaagtggactcaatttcatccaacaaaacaaaccggcattccctttcagacactcaattccaacactgttcaaacctgcaattatcatttcatatc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
42798490 |
ttcaaaagtggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcatttcatatc |
42798589 |
T |
|
| Q |
101 |
tcttcttcaatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42798590 |
tcttcttcaatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgttgtgtttgtgaagatatcaa |
42798689 |
T |
|
| Q |
201 |
ggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798690 |
ggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagaga |
42798789 |
T |
|
| Q |
301 |
ctataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagt |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798790 |
ctatagacaatgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagt |
42798889 |
T |
|
| Q |
401 |
agatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgggtttgaagg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42798890 |
agatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgggtttgaagg |
42798989 |
T |
|
| Q |
501 |
gtttgtgatcagcactccactcactttcatgttc |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42798990 |
gtttgtgatcagcactccactcactttcatgttc |
42799023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 9 - 472
Target Start/End: Original strand, 34566633 - 34567096
Alignment:
| Q |
9 |
tggactcaatttcatccaacaaaacaaaccggcattccctttcagacactcaattccaacactgttcaaacctgcaattatcatttcatatctcttcttc |
108 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| ||||||| || ||||||||| |||| ||||||||| |||| |||||||||||||| ||| | |
|
|
| T |
34566633 |
tggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcatttcatatcttttcctt |
34566732 |
T |
|
| Q |
109 |
aatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattgctgtgtttgtgaagatatcaaggtaaaac |
208 |
Q |
| |
|
|||||||| ||||| | || || || || ||||| || ||| ||||| | ||| || |||| || ||||||||||||||||| |||||||||| |
|
|
| T |
34566733 |
aatctttctctattgaccttgatgtaattatcagtgaaactttcatctgacaacattgatgctaaaagatgttgtgtttgtgaagatattaaggtaaaac |
34566832 |
T |
|
| Q |
209 |
tcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaac |
308 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
34566833 |
tcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagactataaac |
34566932 |
T |
|
| Q |
309 |
aatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcg |
408 |
Q |
| |
|
||||||| ||| || || ||||||||| |||||| ||| |||||||| |||||||||| || ||| ||| || ||||| || |||||||||||| |
|
|
| T |
34566933 |
aatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtagatttcg |
34567032 |
T |
|
| Q |
409 |
tctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtt |
472 |
Q |
| |
|
||||||| |||||| |||||||| ||||| |||| ||||| || || ||||||||||||| |
|
|
| T |
34567033 |
tctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgtt |
34567096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University