View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_82 (Length: 345)
Name: NF11309A_low_82
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 99 - 337
Target Start/End: Original strand, 2709924 - 2710162
Alignment:
| Q |
99 |
gggggaatccaccttcatggtttagtaggtcaaaaaactcaaagtagccgtgcttaatattctacttgagcaattaagaaacctacaattgagagacaaa |
198 |
Q |
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| T |
2709924 |
gggggaatccaccttcatggtttagtaggtcaaaaaactcaaagtagccgtgcttaatattctacttgagcaattaagaaacctacaatcgagagacaaa |
2710023 |
T |
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| Q |
199 |
tttccaccctcaacattaatcatttgnnnnnnnngaatcattatcgaggacaccaaccaaaccttgcttaaattcttgcgattgcagaactctaatatan |
298 |
Q |
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| T |
2710024 |
tttcctccctcaacattaatcatttgaaaaaaaagaatcattatcgaggacaccagccaaaccttgcttaaattcttgcgattgcagaactccaatattt |
2710123 |
T |
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| Q |
299 |
nnnnnnggtacaatagaggaccagtggcccataacacca |
337 |
Q |
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| T |
2710124 |
ttttttggtacaatagaggaccagtggcccataacacca |
2710162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 2709807 - 2709901
Alignment:
| Q |
6 |
atatgaaaggtaacattcggatctaaaggcaaataacatgaacatgtgaggcttgtcgtgaaaagagtaagatctttcatgcgatagagtggagg |
100 |
Q |
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| T |
2709807 |
atatgaaaggtaaaattcggatctaaaggcaaataacatgaacatgtgaggcttgtcgtgaaaagagtgagatctttcatgcgatagagtggagg |
2709901 |
T |
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