View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_86 (Length: 341)
Name: NF11309A_low_86
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 6917743 - 6917429
Alignment:
| Q |
5 |
caagaacagtcatccaatagtgcaaaaattacttatcccttggccctgctcccactcatagttgaaactgagtgtttgtgatcaatattattattgaata |
104 |
Q |
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| T |
6917743 |
caagaacagtcatcaaatagtgcaaaaattacttatcacttggccctgcaccatctcttagtggaaactgagtgtttgtgatcaatattattattgaata |
6917644 |
T |
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| Q |
105 |
ataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaagcaaaaggaaaatcagaacctatatgtttcggaatcaacctcgccgcgctca |
204 |
Q |
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| T |
6917643 |
ataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaagcaaatggaaaatcagaacctatatgtttcgaaatcaacctcgccgcgctca |
6917544 |
T |
|
| Q |
205 |
atcttgatggcctggaacttgcctttctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcgtctccggatagtacctgttt |
304 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917543 |
atcttgatggcctggaacttgccattctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcgtctccggatagtacctgttc |
6917444 |
T |
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| Q |
305 |
cctgttgcagaactg |
319 |
Q |
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||||||||||||||| |
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| T |
6917443 |
cctgttgcagaactg |
6917429 |
T |
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