View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_87 (Length: 341)
Name: NF11309A_low_87
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 27760832 - 27760504
Alignment:
| Q |
1 |
aataagaaaataaaaaaccttactacgcattttttacggtagtaatatatactcatcttgaatgaattataagtaaaagttaattaaattacgtatatca |
100 |
Q |
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| T |
27760832 |
aataagaaaataaaaaaccttcctacgcattttttaccgtagtaatatatactcatcttgaatgaattataagtaaaagttaattaaattacgtatatca |
27760733 |
T |
|
| Q |
101 |
agaaaagtaattgattaaattttatctataaaa-ttcaataaaagttaagtcttttgcctatattaccctctaatgactaataaatttagtcattgcaaa |
199 |
Q |
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| T |
27760732 |
agaaaagtaattgattaaattttatctataaaaattcaataaaagtaaagtcttttgcctatattaccctctaatgactaataaatttagtcattgcaaa |
27760633 |
T |
|
| Q |
200 |
tataaaaagttaattaaacgaggtatattttagagacactgccatatattaaattatcgataattttttaaaatttgcttatgtttcattctaaaaacta |
299 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27760632 |
tataaaaagttaattaaatgaggtatattttagagacactaccatatattaaattaccgataattttttaaaatttgcttatgtttcattctaaaaacta |
27760533 |
T |
|
| Q |
300 |
tgagttacttttacttagatttcattcat |
328 |
Q |
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| ||||||||||||||||||||||||||| |
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| T |
27760532 |
tcagttacttttacttagatttcattcat |
27760504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 2 - 328
Target Start/End: Complemental strand, 21636998 - 21636669
Alignment:
| Q |
2 |
ataagaaaataaaaaaccttactacgcattttttacggtagtaatatata--ctcatcttgaatgaattataagtaaaagttaattaaattacgtatatc |
99 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21636998 |
ataagaaaataaaaaaccttcctacgcattttttacggtagtaatatatatacttatcttgaatgaattataagtaaaagttaattaaattacgtatatc |
21636899 |
T |
|
| Q |
100 |
aagaaaagtaattgattaaattttatctataaaa-ttcaataaaagttaagtcttttgcctatattaccctctaatgactaataaatttagtcattgcaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21636898 |
aagaaaagtaattgattaaattttatctataaaaattcaataaaagttaagtcttttgcctatattaccctctaatgactaataaatttagtcattgcaa |
21636799 |
T |
|
| Q |
199 |
atataaaaagttaattaaacgaggtatattttagagacactgccatatattaaattatcgataattttttaaaatttgcttatgtttcattctaaaaact |
298 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21636798 |
atataaaaagttaattaaatgaggtatattttagagacactaccatatattaaattaccgataattttttaaaatttgcttatgtttcattctaaaaact |
21636699 |
T |
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| Q |
299 |
atgagttacttttacttagatttcattcat |
328 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21636698 |
atgagttacttttacttagatttcattcat |
21636669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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