View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_9 (Length: 547)
Name: NF11309A_low_9
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 134 - 439
Target Start/End: Original strand, 37549996 - 37550301
Alignment:
| Q |
134 |
ttggatttgtaatcagtggtggagattgtgattctgccgggggattagggggattgctactgacagggttgttaagagtaaaaggaggagtaggagagtt |
233 |
Q |
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| T |
37549996 |
ttggatttgtaatcactggtggagattgtgattctgccggaggattaggtggattactactgacagggttgttaagagtaaaaggaggagtaggagagtt |
37550095 |
T |
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| Q |
234 |
gaaattcggcggcggaaaagaaccacaagattgatcggagcatttgttgttgtggtgacggcgtaagacgccaaatcctaagatgagaccagtaataacg |
333 |
Q |
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| T |
37550096 |
gaaattcggcggcggaaaagaaccgcaagattgatcggagcatttgttgttgtggtgacggcgtaagacgccaaatcctaagatgagaccagtaataacg |
37550195 |
T |
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| Q |
334 |
agagcagtgacgatgaagatgaagatctttgttgcttttcccacgtagcacatttctctgaacttgtttaagatttgtgttgttgatggtggggcaatgt |
433 |
Q |
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| T |
37550196 |
agagcagtgacgatgaagatgaagatctttgttgcttttcccacgtagcacatttctctgaacttgtttaagatttgtgttgttgatggtggggcaatgt |
37550295 |
T |
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| Q |
434 |
tctgaa |
439 |
Q |
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|||||| |
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| T |
37550296 |
tctgaa |
37550301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 37549869 - 37549916
Alignment:
| Q |
7 |
gtaggcgtactaggcggctccgccacactcggcggtgattgcaccaac |
54 |
Q |
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| T |
37549869 |
gtaggcgtactaggcggctccgccacactcggcggtgattgcaccaac |
37549916 |
T |
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