View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_92 (Length: 336)
Name: NF11309A_low_92
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 5827291 - 5826974
Alignment:
| Q |
7 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827291 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
5827192 |
T |
|
| Q |
107 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
206 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827191 |
ctaccgaagtattgtaaccacctggaagagagcttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
5827092 |
T |
|
| Q |
207 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5827091 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttagtttgaaagtt |
5826992 |
T |
|
| Q |
307 |
ttgatattcagtccatct |
324 |
Q |
| |
|
|||||||||||||||||| |
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| T |
5826991 |
ttgatattcagtccatct |
5826974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 10 - 324
Target Start/End: Complemental strand, 5768835 - 5768521
Alignment:
| Q |
10 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgccta |
109 |
Q |
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||||| ||||| ||||||||| | |||||||||| || ||||||||||| || ||||| || || ||||| ||||||| ||||||||||||||| || | |
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| T |
5768835 |
gcctcgtcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccga |
5768736 |
T |
|
| Q |
110 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttcttt |
209 |
Q |
| |
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| || || | |||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5768735 |
cagaggtgtcataaccatttggaagagagcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccatagcacctccttcttt |
5768636 |
T |
|
| Q |
210 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5768635 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtctgaaagttttt |
5768536 |
T |
|
| Q |
310 |
atattcagtccatct |
324 |
Q |
| |
|
|||| || ||||||| |
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|
| T |
5768535 |
atatccactccatct |
5768521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 5829613 - 5829927
Alignment:
| Q |
10 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgccta |
109 |
Q |
| |
|
||||||||||| ||||||||| | |||||||| | || | ||||||||| || || || || || ||||| || || | || ||||||||||| || | |
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| T |
5829613 |
gcctcatcaagcaaaagtattttggggttttttagcatggttcttgcaatagcaatgcgctgcttctgtcctccggacagttgcgtgcctctttctccaa |
5829712 |
T |
|
| Q |
110 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttcttt |
209 |
Q |
| |
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| || || | || ||| |||||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
5829713 |
cagacgtgtcatatccatctggaagattacttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttt |
5829812 |
T |
|
| Q |
210 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagttttg |
309 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||| |
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| T |
5829813 |
tccataacctatgttagcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaccccatttgttgtctcaaccagcttaatctgaaagttttg |
5829912 |
T |
|
| Q |
310 |
atattcagtccatct |
324 |
Q |
| |
|
| || || ||||||| |
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|
| T |
5829913 |
agatccactccatct |
5829927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 5794883 - 5794793
Alignment:
| Q |
7 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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| T |
5794883 |
gttgcctcatcaagtaaaagtattctagggtctttcaatatagctcttgca--------acattgtttttgtccacctggtaactgtgtgcctctttcg |
5794793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 29327124 - 29327441
Alignment:
| Q |
7 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
106 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| || ||||||||||| || || || || || ||||| || |||| |||||||||||||||| |
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| T |
29327124 |
gttgcctcatcaagcaaaagtattttagggtttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgc |
29327223 |
T |
|
| Q |
107 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
206 |
Q |
| |
|
| || || || | |||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||| |
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| T |
29327224 |
caacagaagtgtcataaccatcaggaagagaacttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcctccgtagcaccatcttc |
29327323 |
T |
|
| Q |
207 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtttgaaagtt |
306 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
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| T |
29327324 |
tttaccataagctatgttggcgcgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttattctgaaagtt |
29327423 |
T |
|
| Q |
307 |
ttgatattcagtccatct |
324 |
Q |
| |
|
||||||| || ||||||| |
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|
| T |
29327424 |
ttgatatccactccatct |
29327441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 3431216 - 3431268
Alignment:
| Q |
37 |
tttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataa |
89 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| |
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|
| T |
3431216 |
tttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccagataa |
3431268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 17872391 - 17872447
Alignment:
| Q |
55 |
gcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctacc |
111 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || | |||||||| |||||| |
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|
| T |
17872391 |
gcaattgctattctttgtttttgtccacctgataattgaatccctctttctcctacc |
17872447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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